| MMDBm0000160 | Escherichia coli | Bacteria | Proteobacteria | Human | Unknown | ECMDB |
| MMDBm0000162 | Escherichia coli CFT073 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000334 | Pseudomonas putida | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000572 | Saccharolobus solfataricus | Archaea | Crenarchaeota | Human Feces | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001562 | Dickeya dadantii 3937 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001658 | Haemophilus influenzae Rd KW20 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001673 | Haloferax volcanii DS2 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001685 | Helicobacter pylori 26695 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001686 | Helicobacter pylori J99 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001955 | Picrophilus torridus DSM 9790 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001985 | Thermus thermophilus HB8 | Bacteria | Deinococcus-thermus | Not Available | Not Available | RHEA |
| MMDBm0002045 | Zymomonas mobilis subsp. mobilis ZM4 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002104 | Escherichia coli W | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002149 | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002389 | Pseudoalteromonas atlantica T6c | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002391 | Pseudomonas aeruginosa PAO1 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002538 | Sinorhizobium meliloti 1021 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002641 | Sulfolobus solfataricus P2 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002642 | Sulfolobus tokodaii str. 7 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002643 | Sulfolobus acidocaldarius DSM 639 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002723 | Treponema pallidum subsp. pallidum str. Nichols | Bacteria | Spirochaetes | Human | Not Available | RHEA |
| MMDBm0542442 | Escherichia coli O157:H7 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
