| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Bacteria | Verrucomicrobia | Human | Metabolic reconstruction | VMH |
| MMDBm0148853 | Cryptococcus neoformans var. neoformans B-3501A | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0148857 | Cryptococcus neoformans var. neoformans JEC21 | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0810484 | Peptoniphilus lacrimalis DSM 7455 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810498 | Peptoniphilus timonensis JC401 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810478 | Peptoniphilus harei ACS-146-V-Sch2b | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810309 | Anaerococcus vaginalis ATCC 51170 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810781 | Kallipyga massiliensis ph2 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810479 | Peptoniphilus indolicus ATCC 29427 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002706 | Thermosipho melanesiensis BI429 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002712 | Thermotoga sp. RQ2 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0001963 | Thermotoga maritima MSB8 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002711 | Thermotoga lettingae TMO | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0001613 | Fervidobacterium nodosum Rt17-B1 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002713 | Thermotoga neapolitana DSM 4359 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002707 | Thermosipho africanus TCF52B | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002710 | Thermotoga petrophila RKU-1 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002642 | Sulfolobus tokodaii str. 7 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002641 | Sulfolobus solfataricus P2 | Archaea | Crenarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0881917 | Methanomassiliicoccus luminyensis B10 | Archaea | Euryarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0002699 | Thermomicrobium roseum DSM 5159 | Bacteria | Chloroflexi | Not Available | Not Available | RHEA |
| MMDBm0002690 | Thermococcus kodakarensis KOD1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0645212 | Acetomicrobium hydrogeniformans ATCC BAA-1850 | Bacteria | Synergistetes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0645329 | Pyramidobacter piscolens W5455 | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0645211 | Acetomicrobium hydrogeniformans | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
