MiMeDB: Cryptococcus neoformans var. neoformans B-3501A (MMDBm0148853)

Microbe Identification

Microbe name

Cryptococcus neoformans var. neoformans B-3501A

NCBI Taxonomy ID

283643

Microbe Taxonomy

Superkingdom

Eukaryota

Kingdom

Fungi

Phylum

Basidiomycota

Class

Tremellomycetes

Order

Tremellales

Family

Cryptococcaceae

Genus

Cryptococcus

Species

neoformans

Strain

Microbe Properties

Gram staining properties

Positive

Shape

Cocci

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen preference

Not Available

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012884	D-Glyceraldehyde 3-phosphate	(2R)-3-phospho-glyceroyl phosphate	Glyceraldehyde-3-phosphate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012895	diphosphate	Phosphoribosyl pyrophosphate	Orotate phosphoribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0012942	5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate	5-Aminoimidazole ribonucleotide	Phosphoribosylaminoimidazole carboxylase	Carboxylation	RHEA	34755880
MMDBr0012970	D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate	3-(Imidazol-4-yl)-2-oxopropyl phosphate	Imidazoleglycerol-phosphate dehydratase	Hydration/dehydration of C-O bond; Synthesis	RHEA	34755880
MMDBr0012978	Cyanate	Carbon dioxide	Cyanate hydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0012993	Hydroquinone	Semiquinone	Laccase	Oxidation	RHEA	34755880
MMDBr0013001	Acetic acid	Acetyl phosphate	Acetate kinase	Transfer of a formyl group	RHEA	34755880
MMDBr0013081	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	7,8-dihydrofolate monoglutamate	Bifunctional dihydrofolate reductase-thymidylate synthase	Reduction; Synthesis	RHEA	34755880
MMDBr0013170	Adenosine monophosphate	ADP	Adenylate kinase	Phosphorylation	RHEA	34755880
MMDBr0013179	Adenosine triphosphate	ADP	Replicase large subunit	Synthesis of a primer	RHEA	34755880
MMDBr0013187	Adenosine triphosphate	Shikimate 3-phosphate	Pentafunctional AROM polypeptide	Phosphorylation	RHEA	34755880
MMDBr0013276	Galactose 1-phosphate	Glucose 1-phosphate	Galactose-1-phosphate uridylyltransferase	Transfer of an uridylyl group	RHEA	34755880
MMDBr0013339	aldehydo-D-ribose 5-phosphate	D-Ribulose 5-phosphate	Bifunctional ribokinase/ribose-5-phosphate isomerase A	Isomerization	RHEA	34755880
MMDBr0013404	alpha-D-mannose 1-phosphate	diphosphate	Alginate biosynthesis protein AlgA	Synthesis	RHEA	34755880
MMDBr0013416	L-Glutamic acid	Ornithine	Arginine biosynthesis bifunctional protein ArgJ	Acetylation; Synthesis	RHEA	34755880
MMDBr0013432	(1R,2S)-homoisocitrate	cis-homoaconitate	Probable methanogen homoaconitase large subunit	Hydrolysis	RHEA	34755880
MMDBr0013437	5-Methylthioribulose 1-phosphate	5-(methylsulfanyl)-2,3-dioxopentyl phosphate	Probable bifunctional methylthioribose-1-phosphate isomerase/methylthioribulose-1-phosphate dehydratase	Dehydration and isomerisation	RHEA	34755880
MMDBr0013458	Guanosine triphosphate	Guanosine diphosphate	Adenylosuccinate synthetase	Synthesis	RHEA	34755880
MMDBr0013546	Fe2+	Iron(3+)	Cytochrome c peroxidase, mitochondrial	Peroxidation	RHEA	34755880
MMDBr0013570	Water	2-Aminobenzoic acid	Kynureninase	Cleavage of kynurenine	RHEA	34755880
MMDBr0013681	NADP(+)	3-Dehydroshikimic acid	Pentafunctional AROM polypeptide	Dehydrogenation	RHEA	34755880
MMDBr0013706	3-Hydroxyanthranilic acid	(2Z,4Z)-2-amino-3-carboxymuconic acid 6-semialdehyde	3-hydroxyanthranilate 3,4-dioxygenase	Oxygenation	RHEA	34755880
MMDBr0013729	Adenosine triphosphate	Adenosine phosphosulfate	Sulfate adenylyltransferase subunit 2	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0013908	Guanosine triphosphate	Guanosine diphosphate	GTPase ArgK	Dephosphorylation; Hydrolysis; Nucleic acid synthesis and/or repair	RHEA	34755880
MMDBr0013941	S-Methyl-5-thio-alpha-D-ribose 1-phosphate	5-Methylthioribulose 1-phosphate	5-deoxyribose 1-phosphate isomerase	Isomerization	RHEA	34755880
MMDBr0013980	D-Myo-inositol 1,2,4,5,6-pentakisphosphate	Myo-inositol hexakisphosphate	Inositol-pentakisphosphate 2-kinase	Phosphorylation	RHEA	34755880
MMDBr0014001	Hydrogen Ion	L-3-Hydroxykynurenine	Kynurenine 3-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0014005	Hydrogen Ion	Carbon dioxide	Urease subunit alpha	Hydrolysis of urea	RHEA	34755880
MMDBr0014068	3-Dehydroquinate	3-Dehydroshikimic acid	Catabolic 3-dehydroquinase	Hydration/dehydration of C-O bond; Synthesis	RHEA	34755880
MMDBr0014083	Shikimate 3-phosphate	5-O-(1-Carboxyvinyl)-3-phosphoshikimate	Pentafunctional AROM polypeptide	Synthesis; Dehydration and isomerisation; Oxidation; Phosphorylation; Transfer of a carboxyvinyl group	RHEA	34755880
MMDBr0014114	N-(5-Phospho-D-ribosyl)anthranilate	1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate	Phosphoribosyl isomerase A	Isomerization	RHEA	34755880
MMDBr0014160	3-deoxy-D-arabino-heptulosonate-7-phosphate	3-Dehydroquinate	Pentafunctional AROM polypeptide	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0014232	NADP(+)	3-oxosphinganine	3-ketodihydrosphingosine reductase TSC10	Reduction	RHEA	34755880
MMDBr0014340	1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate	Indole-3-glycerol phosphate synthase	Synthesis	RHEA	34755880
MMDBr0014436	Acetyl-CoA	CoA	Amino-acid acetyltransferase	Acetylation; Synthesis	RHEA	34755880
MMDBr0014517	L-3-Hydroxykynurenine	3-Hydroxyanthranilic acid	Kynureninase	Cleavage of kynurenine	RHEA	34755880
MMDBr0014804	3-alpha-D-mannopyranosyl-alpha-D-mannopyranose	3-O-(6-O-alpha-D-xylosylphospho-alpha-D-mannopyranosyl)-alpha-D-mannopyranose	3-O-alpha-D-mannopyranosyl-alpha-D-mannopyranose xylosylphosphotransferase	Transfer of phosphate group	RHEA	34755880
MMDBr0016254	Iron(3+)	Fe2+	NADH-cytochrome b5 reductase 2	Reduction	RHEA	34755880
MMDBr0017876	Adenosine triphosphate	ADP	Glutamine synthetase	Synthesis	RHEA	34755880
MMDBr0017905	Chorismate	2-Aminobenzoic acid	Aminodeoxychorismate/anthranilate synthase component 2	Synthesis	RHEA	34755880
MMDBr0024343	Adenosine triphosphate	Hydrogen Ion	Serine/threonine-protein kinase ssn3	Phosphorylation	RHEA	34755880
MMDBr0024351	Water	Acetic acid	Chitin deacetylase	Deacetylation	RHEA	34755880
MMDBr0024352	Water	Acetic acid	Chitin deacetylase	Deacetylation	RHEA	34755880
MMDBr0024505	Tetradecanoyl-CoA	Hydrogen Ion	Glycylpeptide N-tetradecanoyltransferase	Transfer of glycylpeptide N-tetradecanoyl group	RHEA	34755880
MMDBr0024539	Hydrogen Ion	5'-Deoxyadenosine	Lipoyl synthase	Synthesis	RHEA	34755880
MMDBr0024586	L-Serine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0024701	Acetyl-CoA	Hydrogen Ion	Histone acetyltransferase rtt109	N-Acetylation	RHEA	34755880
MMDBr0024702	Acetyl-CoA	Hydrogen Ion	Histone acetyltransferase rtt109	N-Acetylation	RHEA	34755880
MMDBr0024720	Uridine diphosphate glucose	Hydrogen Ion	Sterol 3-beta-glucosyltransferase	Transfer of a glucosyl group	RHEA	34755880
MMDBr0024739	Uridine diphosphate-N-acetylglucosamine	Hydrogen Ion	UDP-N-acetylglucosamine transferase subunit alg13	Transfer of UDP-N-acetylglucosamine	RHEA	34755880
MMDBr0024771	2-hydroxyisobutanoyl-CoA	Hydrogen Ion	tRNA(Met) cytidine acetyltransferase TmcA	N-Acetylation	RHEA	34755880
MMDBr0024772	2-hydroxyisobutanoyl-CoA	Hydrogen Ion	tRNA(Met) cytidine acetyltransferase TmcA	N-Acetylation	RHEA	34755880
MMDBr0024964	L-Cysteine	CoA	Palmitoyltransferase pfa3	Transfer of a palmitoyl group	RHEA	34755880
MMDBr0024965	L-Histidine	Hydrogen Ion	2-(3-amino-3-carboxypropyl)histidine synthase	Synthesis	RHEA	34755880
MMDBr0024971	L-Threonylcarbamoyladenylate	Hydrogen Ion	tRNA N6-adenosine threonylcarbamoyltransferase	Synthesis	RHEA	34755880
MMDBr0025033	Oxygen	Carbon dioxide	Putative JmjC domain-containing histone demethylation protein 1	Demethylation	RHEA	34755880
MMDBr0025071	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (guanine-N(7)-)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025127	S-Adenosylmethionine	Hydrogen Ion	tRNA (adenine(58)-N(1))-methyltransferase TrmI	Methylation	RHEA	34755880
MMDBr0025128	S-Adenosylmethionine	Hydrogen Ion	tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025209	Acetyl-CoA	Hydrogen Ion	N-acetyltransferase Eis	Acetylation	RHEA	34755880
MMDBr0025210	Acetyl-CoA	Hydrogen Ion	Histone acetyltransferase rtt109	N-Acetylation	RHEA	34755880
MMDBr0025237	L-Threonine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0025299	S-Adenosylmethionine	S-Adenosylhomocysteine	Leucine carboxyl methyltransferase 1	Methylation	RHEA	34755880
MMDBr0025303	S-Adenosylmethionine	Hydrogen Ion	AdoMet-dependent rRNA methyltransferase spb1	Methylation	RHEA	34755880
MMDBr0025305	NADP(+)	Hydrogen Ion	Very-long-chain 3-oxoacyl-CoA reductase	Reduction	RHEA	34755880
MMDBr0025452	NADP(+)	Hydrogen Ion	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025453	Hydrogen Ion	NADP(+)	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025454	NAD	Hydrogen Ion	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025455	Hydrogen Ion	NAD	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025470	Crotonoyl-CoA	Hydrogen Ion	Histone acetyltransferase esa1	N-Acetylation	RHEA	34755880
MMDBr0025471	Crotonoyl-CoA	Hydrogen Ion	Histone acetyltransferase esa1	N-Acetylation	RHEA	34755880
MMDBr0025719	S-Adenosylmethionine	Hydrogen Ion	Histone-lysine N-methyltransferase, H3 lysine-4 specific	Methylation	RHEA	34755880
MMDBr0025726	S-Adenosylmethionine	Hydrogen Ion	Histone-lysine N-methyltransferase, H3 lysine-36 specific	Methylation	RHEA	34755880
MMDBr0025727	S-Adenosylmethionine	Hydrogen Ion	Histone-lysine N-methyltransferase, H3 lysine-79 specific	Methylation	RHEA	34755880
MMDBr0025945	S-Adenosylmethionine	S-Adenosylhomocysteine	mRNA cap guanine-N7 methyltransferase	Methylation	RHEA	34755880
MMDBr0025973	di-mu-Sulfido-diiron(2+)	Hydrogen Ion	NADPH-dependent diflavin oxidoreductase 1	Redox reaction	RHEA	34755880
MMDBr0025974	di-mu-Sulfido-diiron(2+)	Hydrogen Ion	NADPH-dependent diflavin oxidoreductase 1	Redox reaction	RHEA	34755880

Genome Data

Genome Link

MMDBm0148853

Genome Length

18784047 bp

# Predicted Proteins

6761

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-12-08 22:57:33 UTC

Reference

PMID: 17704766

Source Links

GenBank

AAEY00000000