| MMDBm0156399 | Ustilago maydis 521 | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0148857 | Cryptococcus neoformans var. neoformans JEC21 | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0148853 | Cryptococcus neoformans var. neoformans B-3501A | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0002642 | Sulfolobus tokodaii str. 7 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0064354 | Fusarium vanettenii 77-13-4 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0082238 | Sordaria macrospora k-hell | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0056931 | Verticillium alfalfae VaMs.102 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0079093 | Pyricularia oryzae 70-15 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0080658 | Chaetomium globosum | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0081377 | Podospora anserina S mat+ | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0082117 | Neurospora crassa OR74A | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0881918 | Candidatus Nitrososphaera gargensis Ga9.2 | Archaea | Thaumarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0050478 | Botrytis cinerea B05.10 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0050750 | Sclerotinia sclerotiorum 1980 UF-70 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0516564 | Aeromonas media WS | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002394 | Pseudomonas syringae pv. tomato str. DC3000 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0562438 | Yersinia frederiksenii ATCC 33641 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0555709 | Pantoea agglomerans IG1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Bacteria | Proteobacteria | Human | Unknown | ECMDB |
| MMDBm0580229 | Pseudomonas nitroreducens HBP1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0580255 | Pseudomonas alcaliphila 34 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0543506 | Escherichia sp. 4_1_40B | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0542442 | Escherichia coli O157:H7 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0544444 | Klebsiella michiganensis KCTC 1686 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
