| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Bacteria | Verrucomicrobia | Human | Metabolic reconstruction | VMH |
| MMDBm0002648 | Sulfolobus islandicus M.16.27 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001813 | Metallosphaera sedula DSM 5348 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002649 | Sulfolobus islandicus M.16.4 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002644 | Sulfolobus islandicus M.14.25 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002642 | Sulfolobus tokodaii str. 7 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002643 | Sulfolobus acidocaldarius DSM 639 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002641 | Sulfolobus solfataricus P2 | Archaea | Crenarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0002699 | Thermomicrobium roseum DSM 5159 | Bacteria | Chloroflexi | Not Available | Not Available | RHEA |
| MMDBm0645212 | Acetomicrobium hydrogeniformans ATCC BAA-1850 | Bacteria | Synergistetes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001397 | Candidatus Solibacter usitatus Ellin6076 | Bacteria | Acidobacteria | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0639412 | Schlesneria paludicola DSM 18645 | Bacteria | Planctomycetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001998 | Opitutus terrae PB90-1 | Bacteria | Verrucomicrobia | Not Available | Not Available | RHEA |
| MMDBm0001981 | Bdellovibrio bacteriovorus HD100 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0881918 | Candidatus Nitrososphaera gargensis Ga9.2 | Archaea | Thaumarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0809729 | Veillonella atypica ACS-049-V-Sch6 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809111 | Mitsuokella jalaludinii DSM 13811 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809578 | Dialister invisus DSM 15470 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809739 | Veillonella dispar ATCC 17748 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809112 | Mitsuokella multacida DSM 20544 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809587 | Dialister succinatiphilus YIT 11850 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000287 | Veillonella parvula DSM 2008 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0809759 | Veillonella seminalis ACS-216-V-Col6b | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
