| MMDBm0802894 | [Clostridium] methoxybenzovorans SR3 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0802992 | [Clostridium] indolis DSM 755 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805031 | [Clostridium] hiranonis DSM 13275 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0096592 | Yarrowia lipolytica CLIB122 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0001983 | Thermus thermophilus HB27 | Bacteria | Deinococcus-thermus | Not Available | Not Available | RHEA |
| MMDBm0805202 | Terrisporobacter glycolicus ATCC 14880 = DSM 1288 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002642 | Sulfolobus tokodaii str. 7 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002641 | Sulfolobus solfataricus P2 | Archaea | Crenarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0002647 | Sulfolobus islandicus Y.N.15.51 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002646 | Sulfolobus islandicus Y.G.57.14 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002649 | Sulfolobus islandicus M.16.4 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002648 | Sulfolobus islandicus M.16.27 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002644 | Sulfolobus islandicus M.14.25 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002645 | Sulfolobus islandicus L.S.2.15 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002643 | Sulfolobus acidocaldarius DSM 639 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0626730 | Stenotrophomonas rhizophila PCA13 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0802145 | Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0456231 | Rhodobacter sphaeroides | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000411 | Rhodobacter capsulatus | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002423 | Pyrococcus abyssi GE5 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002086 | Pseudomonas stutzeri DSM 4166 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
