| MMDBm0001880 | Mycobacterium tuberculosis H37Rv | Bacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0095324 | Candida albicans SC5314 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0138596 | Ganoderma lucidum | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0064156 | Fusarium graminearum PH-1 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101463 | Pneumocystis carinii | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029026 | Aspergillus fumigatus Af293 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0082117 | Neurospora crassa OR74A | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101467 | Pneumocystis carinii B80 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0001596 | Escherichia fergusonii ATCC 35469 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001257 | Bacillus clausii KSM-K16 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0801616 | Anaerofustis stercorihominis DSM 17244 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0801616 | Anaerofustis stercorihominis DSM 17244 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000032 | Bacillus timonensis 10403023 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0423522 | Bradyrhizobium japonicum USDA 6 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0650453 | Gordonia terrae C-6 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0610808 | Vibrio fluvialis I21563 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0544444 | Klebsiella michiganensis KCTC 1686 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001166 | Achromobacter xylosoxidans A8 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0555709 | Pantoea agglomerans IG1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0580585 | Pseudomonas monteilii NBRC 103158 = DSM 14164 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0676734 | Arthrobacter castelli DSM 16402 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0580236 | Pseudomonas oleovorans MOIL14HWK12 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000030 | Bacillus pseudofirmus OF4 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
