| MMDBm0001200 | Agrobacterium tumefaciens str. C58 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001314 | Brucella abortus bv. 1 str. 9-941 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001312 | Brucella melitensis bv. 1 str. 16M | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001316 | Brucella ovis ATCC 25840 | Bacteria | Proteobacteria | Sheep | Not Available | RHEA |
| MMDBm0001313 | Brucella suis 1330 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002400 | Pseudomonas stutzeri A1501 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002538 | Sinorhizobium meliloti 1021 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002141 | Rhodobacter capsulatus SB1003 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002635 | Streptomyces coelicolor A3(2) | Bacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0002688 | Thermobifida fusca YX | Bacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0001884 | Mycobacterium bovis AF2122/97 | Bacteria | Actinobacteria | Cattle | Not Available | RHEA |
| MMDBm0001882 | Mycobacterium tuberculosis CDC1551 | Bacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0001880 | Mycobacterium tuberculosis H37Rv | Bacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0002391 | Pseudomonas aeruginosa PAO1 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0449773 | Sinorhizobium sp. | NULL | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0416224 | Fusobacterium nucleatum subsp. animalis 4_8 | Bacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416260 | Fusobacterium ulcerans ATCC 49185 | Bacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0519667 | Anaerobiospirillum succiniciproducens | Bacteria | Proteobacteria | Not Available | Metabolic reconstruction | VMH |
| MMDBm0416261 | Fusobacterium varium ATCC 27725 | Bacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000021 | Anaerostipes caccae | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0761343 | Geobacillus stearothermophilus ATCC 7953 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0392196 | Bacteroides intestinalis DSM 17393 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0761370 | Geobacillus vulcani PSS1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0395113 | Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0650438 | Gordonia rubripertincta NBRC 101908 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
