| MMDBm0148857 | Cryptococcus neoformans var. neoformans JEC21 | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0029062 | Aspergillus nidulans FGSC A4 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0086646 | Lopadostoma turgidum | Fungi | Ascomycota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0096592 | Yarrowia lipolytica CLIB122 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0080659 | Chaetomium globosum CBS 148.51 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0148853 | Cryptococcus neoformans var. neoformans B-3501A | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0082117 | Neurospora crassa OR74A | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0881994 | Methanosarcina thermophila | Archaea | Not Available | Not Available | Not Available | RHEA |
| MMDBm0001845 | Methanosarcina barkeri str. Fusaro | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001844 | Methanosarcina mazei Go1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001843 | Methanosarcina acetivorans C2A | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000232 | Parabacteroides distasonis ATCC 8503 | Bacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0772876 | Kurthia massiliensis | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0767930 | Paenibacillus graminis | Bacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0808723 | Faecalicoccus pleomorphus DSM 20574 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000016 | Alcaligenes faecalis subsp. faecalis NBRC 13111 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0648107 | Bifidobacterium longum subsp. longum ATCC 55813 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0562388 | Yersinia bercovieri ATCC 43970 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0774772 | Staphylococcus arlettae CVD059 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001549 | Desulfovibrio vulgaris DP4 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0814056 | Chlorante-Aster yellows phytoplasma | NULL | Tenericutes | Not Available | Not Available | RHEA |
| MMDBm0001156 | Lachnospiraceae bacterium 5_1_63FAA | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001596 | Escherichia fergusonii ATCC 35469 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000009 | Adlercreutzia equolifaciens DSM 19450 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0500745 | Oxalobacter formigenes HOxBLS | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
