| MMDBm0086646 | Lopadostoma turgidum | Fungi | Ascomycota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001673 | Haloferax volcanii DS2 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002642 | Sulfolobus tokodaii str. 7 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001955 | Picrophilus torridus DSM 9790 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0882003 | Thermoproteus tenax | Archaea | Not Available | Not Available | Not Available | RHEA |
| MMDBm0002278 | Enterococcus faecalis OG1RF | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000047 | Bacteroides fragilis YCH46 | Bacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000332 | Pseudomonas fluorescens | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0580255 | Pseudomonas alcaliphila 34 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0404762 | Formosa agariphila KMM 3901 | NULL | Bacteroidetes | Not Available | Not Available | RHEA |
| MMDBm0550377 | Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0730482 | Bacillus infantis NRRL B-14911 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000233 | Parabacteroides goldsteinii dnLKV18 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0534801 | Enterobacter hormaechei YT3 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001417 | Clostridium lentocellum DSM 5427 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002632 | Streptococcus parauberis KCTC 11537 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001802 | Marinomonas sp. MWYL1 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000337 | Ralstonia pickettii | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002710 | Thermotoga petrophila RKU-1 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0392224 | Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0560531 | Serratia liquefaciens ATCC 27592 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000181 | Faecalibacterium prausnitzii SL3/3 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002591 | Streptococcus agalactiae NEM316 | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001659 | Haemophilus influenzae 86-028NP | Bacteria | Proteobacteria | Human | Not Available | RHEA |
