MiMeDB: Mycolicibacterium smegmatis (MMDBm0000525)

Microbe Identification

Microbe name

Mycolicibacterium smegmatis

NCBI Taxonomy ID

1772

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Actinobacteria

Class

Actinobacteria

Order

Corynebacteriales

Family

Mycobacteriaceae

Genus

Mycolicibacterium

Species

smegmatis

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Not Available

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen preference

Not Available

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012899	Guanosine triphosphate	Carbon dioxide	Phosphoenolpyruvate carboxykinase [GTP]	Phosphorylation	RHEA	34755880
MMDBr0012989	Adenosine triphosphate	ADP	D-alanine--D-alanine ligase	Ligation	RHEA	34755880
MMDBr0013045	Alpha-D-glucose 6-phosphate	beta-D-Fructose 6-phosphate	Glucose-6-phosphate isomerase	Isomerization	RHEA	34755880
MMDBr0013362	L-Arabinose	L-Ribulose	L-arabinose isomerase	Isomerization	RHEA	34755880
MMDBr0013538	L-Lactic acid	Acetic acid	L-lactate 2-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0013575	Acetyl-CoA	Citric acid	Citrate (Re)-synthase	Synthesis	RHEA	34755880
MMDBr0013665	Adenosine triphosphate	ADP	Ribulokinase	Phosphorylation	RHEA	34755880
MMDBr0013801	Phosphoenolpyruvic acid	Phosphate	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Synthesis	RHEA	34755880
MMDBr0013970	L-Alanine	D-Alanine	L-alanine/L-glutamate racemase	Racemization	RHEA	34755880
MMDBr0013978	Hydrogen peroxide	Water	Bromoperoxidase-catalase	Synthesis	RHEA	34755880
MMDBr0014021	Hydrogen Ion	Hydrogen peroxide	Methanobactin mb-OB3b	Dismutation	RHEA	34755880
MMDBr0014169	Adenosine triphosphate	ADP	Ribulokinase	Phosphorylation	RHEA	34755880
MMDBr0014377	alpha-Ketoglutarate	3-(Imidazol-4-yl)-2-oxopropyl phosphate	Histidinol-phosphate aminotransferase	Amine group addition	RHEA	34755880
MMDBr0014381	Adenosine triphosphate	4-Phospho-L-aspartic acid	Aspartokinase	Dehydrogenation; Phosphorylation	RHEA	34755880
MMDBr0014435	L-Aspartate-semialdehyde	4-Phospho-L-aspartic acid	Aspartate-semialdehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014454	Adenosine triphosphate	ADP	Phosphate-import ATP-binding protein PhnC	Transport	RHEA	34755880
MMDBr0016113	Acetamide	Acetic acid	Acetamidase	Amide hydrolysis	RHEA	34755880
MMDBr0016398	Fe2+	Iron(3+)	DNA protection during starvation protein	Not Available	RHEA	34755880
MMDBr0017894	Water	Hydrogen Ion	Histidinol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0017897	Adenosine triphosphate	diphosphate	S-adenosylmethionine synthase	Synthesis	RHEA	34755880
MMDBr0024540	Acetyl-CoA	CoA	Arylamine N-acetyltransferase	Acetylation	RHEA	34755880
MMDBr0024657	L-Cysteine	Hydrogen Ion	Putative thioredoxin reductase	Reduction	RHEA	34755880
MMDBr0024502	Adenosine triphosphate	diphosphate	Long-chain-fatty-acid--CoA ligase FadD15	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036096	tetradecanoate (n-C14:0)	Tetradecanoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036097	Octadecanoate (N-C18:0)	Stearoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036098	Octadecenoate (N-C18:1)	oleoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036099	Behenic acid	Docosanoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036100	(12R)-hydroxy-(9Z)-octadecenoic acid	(12R)-hydroxy-(9Z)-octadecenoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0038698	Oleic acid	oleoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038699	Linoleic acid	Linoleoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038700	Arachidonic acid	Arachidonyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038701	alpha-Linolenic acid	Alpha-Linolenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038702	Vaccenic acid	11E-Octadecenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038703	Eicosapentaenoic acid	(5Z,8Z,11Z,14Z,17Z)-Icosapentaenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038704	Myristoleic acid	(9Z)-tetradecenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038705	Docosahexaenoic acid	Cervonyl Coenzyme A	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038706	Palmitoleic acid	Palmitoleyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038707	lignoceric acid	Tetracosanoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038708	Erucic acid	13Z-docosenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038709	cerotic acid	hexacosanoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0024503	Adenosine triphosphate	diphosphate	Long-chain-fatty-acid--CoA ligase FadD15	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038994	(3E,5Z)-tetradecadienoic acid	(3E,5Z)-tetradecadienoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038995	3-Oxotetradecanoic acid	3-Oxotetradecanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038996	Myristic acid	myristoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038997	Palmitoleic acid	palmitoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038998	Pentadecanoic acid	pentadecanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038999	Stearic acid	Stearoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0024727	S-Adenosylmethionine	S-Adenosylhomocysteine	Fatty-acid O-methyltransferase	Methylation	RHEA	34755880
MMDBr0039028	Decanoate (N-C10:0)	Methyl decanoate	Fatty-acid O-methyltransferase	Methylation	RHEA	34755880
MMDBr0039029	Farnesoic Acid	Methyl Farnesoate	Fatty-acid O-methyltransferase	Methylation	RHEA	34755880
MMDBr0039030	Caproic acid	Methyl hexanoate	Fatty-acid O-methyltransferase	Methylation	RHEA	34755880
MMDBr0039031	Isobutyric acid	Methyl-2-methylpropanoate	Fatty-acid O-methyltransferase	Methylation	RHEA	34755880
MMDBr0039032	Pelargonic acid	Methyl nonanoate	Fatty-acid O-methyltransferase	Methylation	RHEA	34755880
MMDBr0039033	octanoic acid	Methyl octanoate	Fatty-acid O-methyltransferase	Methylation	RHEA	34755880
MMDBr0039034	S-Adenosylmethionine	Methyl tetradecanoate	Fatty-acid O-methyltransferase	Methylation	RHEA	34755880
MMDBr0025295	Adenosine triphosphate	diphosphate	Medium/long-chain-fatty-acid--CoA ligase FadD17	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039046	Capric acid	Decanoyl-CoA (N-C10:0CoA)	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039047	CoA	Undecanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039048	CoA	(2E)-Octenoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039049	(R)-3-Hydroxyhexanoic acid	(3R)-hydroxyhexanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039050	CoA	trans-2-Hexenoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039051	(R)-3-Hydroxydecanoic acid	(S)-Hydroxydecanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039052	(2E)-undec-2-enoic acid	(2E)-Undecenoyl Coenzyme A	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039053	CoA	Nonanoyl Coenzyme A	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039054	CoA	Octanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039055	(3E,5Z)-dodecadienoic acid	(3E,5Z)-dodecadienoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039056	(3Z,5E)-dodecadienoic acid	(3Z,5E)-dodecadienoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039057	Caproic acid	Hexanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039058	3-Hydroxydodecanoic acid	(S)-3-Hydroxydodecanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039059	(R)-3-Hydroxydodecanoic acid	(3R)-3-hydroxydodecanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039060	3-Hydroxyoctanoic acid	3-Hydroxyoctanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039061	CoA	Lauroyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039062	CoA	Heptanoyl Coenzyme A	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039063	(E)-2-decenoicacid	(2E)-Decenoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039064	11-methyldodecanoic acid	Isotridecanoyl-CoA	Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase (FACL) (EC 6.2.1.2) (EC 6.2.1.3) (EC 6.2.1.42) (Acyl-CoA synthetase) (FACL19) (Steroid-CoA ligase) (Steroid-coenzyme A ligase)	Hydrolysis; Ligation	RHEA	34755880

Genome Data

Genome Link

Not Available

Genome Length

Not Available

# Predicted Proteins

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

Reference

PMID: 17704766

Source Links

GenBank