MiMeDB: Mycoplasma pneumoniae M129 (MMDBm0001906)

Microbe Identification

Microbe name

Mycoplasma pneumoniae M129

NCBI Taxonomy ID

272634

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Tenericutes

Class

Mollicutes

Order

Mycoplasmatales

Family

Mycoplasmataceae

Genus

Mycoplasma

Species

pneumoniae

Strain

Microbe Properties

Gram staining properties

Positive

Shape

Cocci

Mobility

Flagellar presence

Number of membranes

Oxygen preference

Aerobe; anaerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

HostAssociated

Biotic relationship

Free living

Cell arrangement

Singles

Sporulation

Singles

Metabolism

Ferments only glucose

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human			Unknown

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012860	(2R)-2-phosphoglyceric acid	Phosphoenolpyruvic acid	Enolase	Enolization	RHEA	34755880
MMDBr0012884	D-Glyceraldehyde 3-phosphate	(2R)-3-phospho-glyceroyl phosphate	Glyceraldehyde-3-phosphate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012913	(6S)-5-formyl-5,6,7,8-tetrahydrofolic acid	5,10-Methenyltetrahydrofolate	5-formyltetrahydrofolate cyclo-ligase	Transfer of a formimidoyl group	RHEA	34755880
MMDBr0012916	D-Glyceraldehyde 3-phosphate	aldehydo-D-ribose 5-phosphate	Transketolase	Transfer of ketol group	RHEA	34755880
MMDBr0012981	alpha-D-mannose 1-phosphate	D-mannose 6-phosphate	Phosphomannomutase/phosphoglucomutase	Transfers of a phosphate group; Isomerization; Intramolecular transfer of functional group	RHEA	34755880
MMDBr0013001	Acetic acid	Acetyl phosphate	Acetate kinase	Transfer of a formyl group	RHEA	34755880
MMDBr0013027	CMP	CDP	Cytidylate kinase	Phosphorylation	RHEA	34755880
MMDBr0013045	Alpha-D-glucose 6-phosphate	beta-D-Fructose 6-phosphate	Glucose-6-phosphate isomerase	Isomerization	RHEA	34755880
MMDBr0013081	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	7,8-dihydrofolate monoglutamate	Bifunctional dihydrofolate reductase-thymidylate synthase	Reduction; Synthesis	RHEA	34755880
MMDBr0013173	Uridine 5'-monophosphate	Phosphoribosyl pyrophosphate	Bifunctional protein PyrR	Transfer of phosphoribosyl group	RHEA	34755880
MMDBr0013214	Deoxycytidine	2'-Deoxyuridine	Cytidine deaminase	Deamination	RHEA	34755880
MMDBr0013226	5-Thymidylic acid	dTDP	Putative thymidylate kinase	Phosphorylation	RHEA	34755880
MMDBr0013243	D-Ribulose 5-phosphate	Xylulose 5-phosphate	Ribulose-phosphate 3-epimerase	Epimerization	RHEA	34755880
MMDBr0013292	beta-D-fructose 1-phosphate	beta-D-Fructose 1,6-bisphosphate	1-phosphofructokinase	Phosphorylation	RHEA	34755880
MMDBr0013294	Guanosine 3',5'-bis(diphosphate)	Guanosine diphosphate	Bifunctional (p)ppGpp synthase/hydrolase RelA	Hydrolysis of bond	RHEA	34755880
MMDBr0013305	3-Dehydro-L-gulonate 6-phosphate	L-Xylulose 5-phosphate	3-keto-L-gulonate-6-phosphate decarboxylase SgbH	Decarboxylation	RHEA	34755880
MMDBr0013307	Riboflavin	Flavin mononucleotide	Bifunctional riboflavin kinase/FMN adenylyltransferase	Phosphorylation	RHEA	34755880
MMDBr0013339	aldehydo-D-ribose 5-phosphate	D-Ribulose 5-phosphate	Bifunctional ribokinase/ribose-5-phosphate isomerase A	Isomerization	RHEA	34755880
MMDBr0013347	beta-D-Fructose 1,6-bisphosphate	D-Glyceraldehyde 3-phosphate	Fructose-bisphosphate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0013357	(2R)-3-phosphoglyceric acid	(2R)-3-phospho-glyceroyl phosphate	Phosphoglycerate kinase	Phosphorylation	RHEA	34755880
MMDBr0013382	(6S)-5,6,7,8-tetrahydrofolic acid	7,8-dihydrofolate monoglutamate	Bifunctional dihydrofolate reductase-thymidylate synthase	Reduction	RHEA	34755880
MMDBr0013444	D-Ribose-5-phosphate	Phosphoribosyl pyrophosphate	Ribose-phosphate pyrophosphokinase 1	Phosphorylation	RHEA	34755880
MMDBr0013470	(2R)-2-phosphoglyceric acid	(2R)-3-phosphoglyceric acid	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	Intramolecular transfer of functional group	RHEA	34755880
MMDBr0013488	Thymidine	2-deoxy-alpha-D-ribose 1-phosphate	Pyrimidine-nucleoside phosphorylase	Phosphorylation	RHEA	34755880
MMDBr0013493	Cytidine	Uridine	Cytidine deaminase	Deamination	RHEA	34755880
MMDBr0013495	beta-D-Fructose 6-phosphate	beta-D-Fructose 1,6-bisphosphate	ATP-dependent 6-phosphofructokinase	Phosphorylation	RHEA	34755880
MMDBr0013571	Uridine	Uridine 5'-monophosphate	Putative uridine kinase DAS2	Phosphorylation	RHEA	34755880
MMDBr0013708	Inosinic acid	Phosphoribosyl pyrophosphate	Hypoxanthine-guanine phosphoribosyltransferase	Transfer of phosphoribosyl group; Synthesis	RHEA	34755880
MMDBr0013709	Phosphoribosyl pyrophosphate	Inosinic acid	Hypoxanthine-guanine phosphoribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0013758	Glycerol 3-phosphate	Dihydroxyacetone phosphate	Alpha-glycerophosphate oxidase	Oxidation	RHEA	34755880
MMDBr0013759	Glycerol 3-phosphate	Dihydroxyacetone phosphate	Glycerol 3-phosphate oxidase	Oxidation	RHEA	34755880
MMDBr0013774	L-Ribulose 5-phosphate	L-Xylulose 5-phosphate	Putative L-ribulose-5-phosphate 3-epimerase SgbU	Epimerization	RHEA	34755880
MMDBr0013784	D-Glyceraldehyde 3-phosphate	Dihydroxyacetone phosphate	Bifunctional PGK/TIM	Isomerization	RHEA	34755880
MMDBr0013843	Thymidine	5-Thymidylic acid	Thymidine kinase	Phosphorylation	RHEA	34755880
MMDBr0013886	Carbamoylphosphate	Citrulline	Ornithine carbamoyltransferase	Transfer of a carbamoyl group	RHEA	34755880
MMDBr0013901	L-Arginine	Citrulline	Arginine deiminase	Hydrolysis of l-arginine to citrulline and ammonium ion	RHEA	34755880
MMDBr0013906	Mannitol 1-phosphate	beta-D-Fructose 6-phosphate	Mannitol-1-phosphate 5-dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013908	Guanosine triphosphate	Guanosine diphosphate	GTPase ArgK	Dephosphorylation; Hydrolysis; Nucleic acid synthesis and/or repair	RHEA	34755880
MMDBr0013930	Glucose 1-phosphate	Uridine diphosphate glucose	UTP--glucose-1-phosphate uridylyltransferase AglF	N-Acetylation	RHEA	34755880
MMDBr0014035	GMP	Guanosine diphosphate	Guanylate kinase	Phosphorylation	RHEA	34755880
MMDBr0014126	Glycerol	Glycerol 3-phosphate	Glycerol kinase	Phosphorylation	RHEA	34755880
MMDBr0014144	Isopropyl alcohol	Acetone	NADP-dependent isopropanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014178	Uridine diphosphate glucose	Uridine diphosphategalactose	UDP-glucose 4-epimerase	Epimerization	RHEA	34755880
MMDBr0014198	L-Ribulose 5-phosphate	Xylulose 5-phosphate	L-ribulose-5-phosphate 4-epimerase	Epimerization	RHEA	34755880
MMDBr0014251	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	5,10-Methenyltetrahydrofolate	C-1-tetrahydrofolate synthase, cytoplasmic	Synthesis	RHEA	34755880
MMDBr0014257	nicotinate beta-D-ribonucleotide	Nicotinic acid adenine dinucleotide	Probable nicotinate-nucleotide adenylyltransferase	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0014369	5,10-Methenyltetrahydrofolate	(6S)-10-formyltetrahydrofolic acid	C-1-tetrahydrofolate synthase, cytoplasmic	Reversible cyclization	RHEA	34755880
MMDBr0014416	Uridine diphosphategalactose	UDP-D-Galacto-1,4-furanose	UDP-galactopyranose mutase	Intramolecular transfer of functional group	RHEA	34755880
MMDBr0014447	Uridine 5'-monophosphate	Uridine 5'-diphosphate	UMP-CMP kinase	Phosphorylation	RHEA	34755880
MMDBr0014472	Cytidine	CMP	Cytidine kinase	Phosphorylation	RHEA	34755880
MMDBr0014514	dCMP	dCDP	Cytidylate kinase	Phosphorylation	RHEA	34755880
MMDBr0014556	GMP	Phosphoribosyl pyrophosphate	Hypoxanthine-guanine phosphoribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0014557	Phosphoribosyl pyrophosphate	GMP	Hypoxanthine-guanine phosphoribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0014932	Glycerol	Glycerol	Aquaglycerol porin AQY3	Glycerol diffusion across the cytoplasmic membrane	RHEA	34755880
MMDBr0016813	2-Aminobenzoic acid	2-(4-dimethylaminophenyl)diazenylbenzoic acid	FMN-dependent NADPH-azoreductase	Reduction	RHEA	34755880
MMDBr0017871	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	(6S)-5,6,7,8-tetrahydrofolic acid	Serine hydroxymethyltransferase	Methylation	RHEA	34755880
MMDBr0017897	L-Methionine	S-Adenosylmethionine	S-adenosylmethionine synthase	Synthesis	RHEA	34755880
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024360	L-Valine	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024368	L-Isoleucine	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024371	L-Asparagine	Hydrogen Ion	Asparagine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024401	L-Serine	Adenosine 3',5'-diphosphate	Holo-[acyl-carrier-protein] synthase	Dehydrogenation; Synthesis	RHEA	34755880
MMDBr0024411	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024418	L-Alanine	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024420	Glycerol 3-phosphate	CMP	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	Synthesis	RHEA	34755880
MMDBr0024435	Deoxyribose 5-phosphate	Acetaldehyde	Deoxyribose-phosphate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0024449	L-Methionine	diphosphate	Methionine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024471	L-Methionine	L-Cysteine	Peptide methionine sulfoxide reductase MsrA	Reduction	RHEA	34755880
MMDBr0024474	L-Proline	diphosphate	Proline--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024483	L-Glutamine	L-Glutamic acid	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024492	Uridine diphosphategalactose	Uridine 5'-diphosphate	Processive diacylglycerol beta-glycosyltransferase	Glycosylation	RHEA	34755880
MMDBr0024493	NAD	Hydrogen Ion	Dihydrolipoyl dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024497	S-Adenosylmethionine	S-Adenosylhomocysteine	Type I restriction enzyme MjaVII methylase subunit	Methylation	RHEA	34755880
MMDBr0024522	Glycine	diphosphate	Glycine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024527	Cytidine triphosphate	diphosphate	Phosphatidate cytidylyltransferase	Transfer of a cytidylyl group	RHEA	34755880
MMDBr0024550	Acetyl-CoA	CoA	Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system	Dehydrogenation	RHEA	34755880
MMDBr0024557	Uridine diphosphate glucose	Uridine 5'-diphosphate	Processive diacylglycerol beta-glucosyltransferase	Synthesis	RHEA	34755880
MMDBr0024559	Adenosine triphosphate	Hydrogen Ion	Histidine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024568	L-Glutamine	L-Glutamic acid	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024578	Adenosine triphosphate	diphosphate	Cysteine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024586	L-Serine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0024619	Pyruvic acid	Carbon dioxide	Pyruvate dehydrogenase E1 component	Dehydrogenation	RHEA	34755880
MMDBr0024628	L-Phenylalanine	Hydrogen Ion	Phenylalanine--tRNA ligase beta subunit	Ligation	RHEA	34755880
MMDBr0024630	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase A	Methylation	RHEA	34755880
MMDBr0024632	L-Aspartic acid	diphosphate	Aspartate--tRNA(Asp) ligase	Ligation	RHEA	34755880
MMDBr0024636	Phosphate	Ribose-1-phosphate	Probable 6-oxopurine nucleoside phosphorylase	Phosphorylation	RHEA	34755880
MMDBr0024644	L-Cystine	L-Cysteine	Peptide methionine sulfoxide reductase MsrA	Reduction	RHEA	34755880
MMDBr0024656	L-Arginine	diphosphate	Arginine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024657	L-Cysteine	L-Cystine	Putative thioredoxin reductase	Reduction	RHEA	34755880
MMDBr0024666	L-Lysine	diphosphate	Lysine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024736	L-Cystine	L-Cysteine	Vitamin B12-dependent ribonucleoside-diphosphate reductase	Reduction	RHEA	34755880
MMDBr0024745	L-Glutamic acid	diphosphate	Glutamate--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024757	L-Histidine	Pyruvic acid	Phosphoenolpyruvate-protein phosphotransferase	Transfer of phosphate group	RHEA	34755880
MMDBr0024763	L-Tryptophan	Hydrogen Ion	Tryptophan--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024768	L-Methionine	L-Cysteine	Peptide methionine sulfoxide reductase MsrB	Reduction	RHEA	34755880
MMDBr0024770	di-mu-Sulfido-diiron(1+)	L-Cysteine	Probable tRNA sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0024778	(6S)-10-formyltetrahydrofolic acid	(6S)-5,6,7,8-tetrahydrofolic acid	Methionyl-tRNA formyltransferase	Transfer of a formyl group	RHEA	34755880
MMDBr0024779	N-Formyl-L-methionine	formate	Peptide deformylase 1	Removal of the N-terminal formyl group	RHEA	34755880
MMDBr0024787	L-Threonine	Hydrogen Ion	Threonine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024843	Hydrogen Ion	Hydrogen Ion	Putative NADH-ubiquinone oxidoreductase MJ0520	Dehydrogenation; Redox reaction	RHEA	34755880
MMDBr0024907	Mannitol	L-Histidine	PTS system mannitol-specific EIICB component	Phosphorylation	RHEA	34755880
MMDBr0024908	D-Glucose	L-Histidine	PTS system glucose-specific EIICBA component	Phosphorylation	RHEA	34755880
MMDBr0024925	Glycerol 3-phosphate	Phosphate	Glycerol-3-phosphate acyltransferase	Acylation	RHEA	34755880
MMDBr0024957	Phosphate	2-deoxy-alpha-D-ribose 1-phosphate	Purine nucleoside phosphorylase	Phosphorylation	RHEA	34755880
MMDBr0024967	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (guanine(37)-N1)-methyltransferase Trm5b	Methylation	RHEA	34755880
MMDBr0024971	L-Threonylcarbamoyladenylate	Hydrogen Ion	tRNA N6-adenosine threonylcarbamoyltransferase	Synthesis	RHEA	34755880
MMDBr0025058	Ascorbic acid	L-Histidine	Ascorbate-specific PTS system EIIB component	Phosphorylation	RHEA	34755880
MMDBr0025060	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0025071	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (guanine-N(7)-)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025104	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase I	Methylation	RHEA	34755880
MMDBr0025105	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase H	Methylation	RHEA	34755880
MMDBr0025116	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (cytidine(34)-2'-O)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025117	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (cytidine(34)-2'-O)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025167	L-Lysine	Hydrogen Ion	tRNA(Ile)-lysidine synthase	Synthesis	RHEA	34755880
MMDBr0025235	L-Serine	Hydrogen Ion	HPr kinase/phosphorylase	Phosphorylation	RHEA	34755880
MMDBr0025236	Hydrogen Ion	L-Serine	HPr kinase/phosphorylase	Phosphorylation	RHEA	34755880
MMDBr0025237	L-Threonine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0025258	Uridine 5'-monophosphate	L-Cysteine	tRNA-specific 2-thiouridylase MnmA	2-Thiolation of uridine	RHEA	34755880
MMDBr0025318	D-Fructofuranose	L-Histidine	PTS system fructose-specific EIIB component	Phosphorylation	RHEA	34755880
MMDBr0025320	(R)-Lipoic acid	Hydrogen Ion	Lipoate-protein ligase A subunit 1	Ligation	RHEA	34755880
MMDBr0025467	Uridine diphosphategalactose	Uridine 5'-diphosphate	Processive diacylglycerol beta-glycosyltransferase	Glycosylation	RHEA	34755880
MMDBr0025468	Uridine diphosphate glucose	Uridine 5'-diphosphate	Processive diacylglycerol beta-glycosyltransferase	Glycosylation	RHEA	34755880
MMDBr0025620	L-Cysteine	Sn-Glycerol-1-phosphate	Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase	Transfer of the diacylglyceryl group	RHEA	34755880
MMDBr0025921	Hydrogen Ion	NAD	FMN-dependent NADH:quinone oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0026057	L-Cystine	L-Cysteine	Vitamin B12-dependent ribonucleoside-diphosphate reductase	Reduction	RHEA	34755880
MMDBr0026058	L-Cystine	L-Cysteine	Vitamin B12-dependent ribonucleoside-diphosphate reductase	Reduction	RHEA	34755880
MMDBr0026059	2'-Deoxyadenosine 5'-diphosphate	L-Cysteine	Vitamin B12-dependent ribonucleoside-diphosphate reductase	Reduction	RHEA	34755880
MMDBr0026060	L-Cystine	L-Cysteine	Vitamin B12-dependent ribonucleoside-diphosphate reductase	Reduction	RHEA	34755880

Genome Data

Genome Link

MMDBm0001906

Genome Length

828057 bp

# Predicted Proteins

752

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-19 16:54:34 UTC

Reference

PMID: 17704766

Source Links

GenBank

NC_000912