| MMDBm0000004 | Acidaminococcus intestini | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002164 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572852 | Acinetobacter lwoffii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000008 | Acinetobacter radioresistens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0516511 | Aeromonas caviae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001198 | Aeromonas hydrophila | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0000010 | Aeromonas jandaei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0516564 | Aeromonas media | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001199 | Aeromonas veronii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000015 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Anaerobe |
| MMDBm0000016 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0481922 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000018 | Alistipes finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394800 | Alistipes indistinctus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394805 | Alistipes onderdonkii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394807 | Alistipes putredinis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000019 | Alistipes shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393872 | Alloprevotella tannerae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0519667 | Anaerobiospirillum succiniciproducens | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0000023 | Arcobacter butzleri | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0723989 | Lancefieldella rimae | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001264 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000039 | Bacteroides clarus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000045 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0514239 | Campylobacter ureolyticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0393007 | Barnesiella intestinihominis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000066 | Bifidobacterium bifidum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000067 | Bifidobacterium bifidum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000068 | Bifidobacterium bifidum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648041 | Bifidobacterium breve | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000075 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648095 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000081 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000084 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000085 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0662671 | Candidatus Blastococcus massiliensis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0482767 | Bordetella hinzii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0423522 | Bradyrhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0417443 | Brevundimonas bacteroides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0417451 | Brevundimonas diminuta | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0483496 | Burkholderia cepacia | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001370 | Campylobacter curvus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0000100 | Campylobacter fetus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0513982 | Campylobacter gracilis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000101 | Campylobacter hominis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0513988 | Campylobacter hyointestinalis | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0514117 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0002282 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001367 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001373 | Campylobacter lari | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0514216 | Campylobacter rectus | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0514218 | Campylobacter showae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0881918 | Candidatus Nitrososphaera gargensis | Not Available | Thaumarchaeota | Aerobe |
| MMDBm0399987 | Capnocytophaga granulosa | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0399995 | Capnocytophaga sputigena | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0533363 | Cedecea davisae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0533412 | Citrobacter amalonaticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000105 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533435 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001450 | Citrobacter koseri | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0533439 | Citrobacter portucalensis | Eubacteria | Proteobacteria | |
| MMDBm0533444 | Citrobacter youngae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0798782 | Clostridium butyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798783 | Clostridium butyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001470 | Clostridium difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000112 | Clostridioides difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798946 | Clostridium sporogenes | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001501 | Cronobacter sakazakii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0510057 | Desulfovibrio desulfuricans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0809578 | Dialister invisus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809587 | Dialister succinatiphilus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0649955 | Dietzia cinnamea | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0397638 | Dyadobacter beijingensis | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0001564 | Dyadobacter fermentans | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0557462 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002181 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0503548 | Eikenella corrodens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000194 | Klebsiella aerogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001574 | Enterobacter asburiae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534723 | Enterobacter cancerogenus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534735 | Enterobacter cloacae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534800 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534801 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0553036 | Enterobacteriaceae bacterium 9_2_54FAA | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0540120 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0540122 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001584 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001593 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001583 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001596 | Escherichia fergusonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0533123 | Atlantibacter hermannii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0543506 | Escherichia sp. 4_1_40B | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000182 | Faecalitalea cylindroides | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0806718 | Eubacterium saphenum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0557502 | Hafnia alvei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544527 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0515049 | Helicobacter canadensis | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0544444 | Klebsiella michiganensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544716 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001067 | Klebsiella variicola | Eubacteria | Proteobacteria | |
| MMDBm0001737 | Lactobacillus acidophilus | Eubacteria | Firmicutes | Anaerobe; microaerophile |
| MMDBm0001739 | Lactobacillus delbrueckii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001743 | Lactobacillus gasseri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001745 | Lactobacillus helveticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002092 | Lactobacillus johnsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001735 | Lactobacillus johnsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790389 | Lactiplantibacillus pentosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001751 | Lactiplantibacillus plantarum | Eubacteria | Firmicutes | Microaerophilic |
| MMDBm0491302 | Lautropia mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002107 | Megasphaera elsdenii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001817 | Methanobrevibacter ruminantium | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0000218 | Methanobrevibacter smithii | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0881917 | Methanomassiliicoccus luminyensis | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0001846 | Methanosphaera stadtmanae | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0001859 | Methylobacterium populi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0505748 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0505746 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001878 | Moraxella catarrhalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0557847 | Morganella morganii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0651046 | Mycobacterium avium | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0815005 | Mycoplasma pneumoniae | Eubacteria | Tenericutes | Anaerobe |
| MMDBm0564358 | Nevskia ramosa | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0723994 | Olsenella profusa | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0555709 | Pantoea agglomerans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0501221 | Parasutterella excrementihominis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0563066 | Plesiomonas shigelloides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000241 | Porphyromonas asaccharolytica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000242 | Porphyromonas endodontalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393500 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393929 | Prevotella brevis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393977 | Prevotella loescheii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000249 | Prevotella ruminicola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394035 | Prevotella shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0002383 | Propionibacterium acnes | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0002385 | freudenreichii | Eubacteria | Actinobacteria | Facultative |
| MMDBm0558116 | Proteus mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558122 | Proteus penneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558527 | Providencia alcalifaciens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558544 | Providencia rettgeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558546 | Providencia rustigianii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0580104 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002086 | Pseudomonas stutzeri | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0547370 | Raoultella planticola | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0658861 | Rhodococcus rhodochrous | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0461764 | Roseomonas mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0397948 | Rudanella lutea | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0639412 | Schlesneria paludicola | Eubacteria | Planctomycetes | Facultative anaerobe |
| MMDBm0809204 | Selenomonas ruminantium | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0559624 | Chania multitudinisentens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0560531 | Serratia liquefaciens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0560533 | Serratia marcescens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002232 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0626640 | Silanimonas lenta | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002553 | Spirosoma linguale | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0626692 | Stenotrophomonas maltophilia | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0626730 | Stenotrophomonas rhizophila | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0557387 | Tatumella ptyseos | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0552405 | Trabulsiella guamensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0809729 | Veillonella atypica | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809739 | Veillonella dispar | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0610806 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610808 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610810 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002190 | Vibrio furnissii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000288 | Vibrio mimicus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002741 | Vibrio parahaemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562388 | Yersinia bercovieri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562438 | Yersinia frederiksenii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562450 | Yersinia kristensenii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002785 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562754 | Yersinia rohdei | Eubacteria | Proteobacteria | Obligate anaerobe |
| MMDBm0552432 | Yokenella regensburgei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000409 | Capnocytophaga ochracea | Eubacteria | Bacteroidetes | Aerobe; anaerobe |
| MMDBm0001035 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001040 | Bifidobacterium breve | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001123 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393941 | Prevotella conceptionensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393956 | Prevotella enoeca | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0546994 | Kluyvera ascorbata | Eubacteria | Proteobacteria | Facultative anaerobe |