| MMDBm0000003 | Acidaminococcus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000004 | Acidaminococcus intestini | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808970 | Acidaminococcus intestini | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000016 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0481922 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0810288 | Anaerococcus hydrogenalis | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000020 | Anaerococcus prevotii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810309 | Anaerococcus vaginalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0801616 | Anaerofustis stercorihominis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802249 | Anaerostipes caccae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802250 | Anaerostipes hadrus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000021 | Anaerostipes caccae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0641709 | Brachyspira pilosicoli | Eubacteria | Spirochaetes | Anaerobe |
| MMDBm0798353 | Butyricicoccus pullicaecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0393350 | Butyricimonas synergistica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393353 | Butyricimonas virosa | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0002325 | Butyrivibrio fibrisolvens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808557 | Catenibacterium mitsuokai | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000882 | Cetobacterium somerae | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0800078 | Clostridium sp. M62/1 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0800049 | Clostridium sp. L2-50 | Eubacteria | Firmicutes | |
| MMDBm0800387 | Clostridium sp. SS2/1 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001476 | Clostridium sp. SY8519 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802901 | Clostridium symbiosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802902 | Clostridium symbiosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802903 | Clostridium symbiosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808574 | Coprobacillus cateniformis | Eubacteria | Firmicutes | |
| MMDBm0808617 | Coprobacillus sp. D7 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000143 | Coprococcus catus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802611 | Coprococcus eutactus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808882 | Erysipelotrichaceae bacterium 5_2_54FAA | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808881 | Erysipelotrichaceae bacterium 3_1_53 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808748 | Holdemanella biformis | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0806711 | Eubacterium brachy | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0801642 | Eubacterium cellulosolvens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000182 | Faecalitalea cylindroides | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0805392 | Agathobaculum desmolans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0808535 | Amedibacillus dolichus | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0802216 | Anaerobutyricum hallii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0001104 | Anaerobutyricum hallii | Eubacteria | Firmicutes | |
| MMDBm0000172 | Eubacterium limosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0801634 | Eubacterium ramulus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000173 | Eubacterium rectale | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000175 | Eubacterium rectale | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806718 | Eubacterium saphenum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000176 | Eubacterium siraeum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806096 | Eubacterium siraeum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806720 | Eubacterium sulci | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805489 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0805488 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000180 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805490 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000181 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002188 | Filifactor alocis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001614 | Finegoldia magna | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805538 | Flavonifractor plautii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0416185 | Fusobacterium gonidiaformans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416186 | Fusobacterium gonidiaformans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416194 | Fusobacterium mortiferum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416200 | Fusobacterium necrophorum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416223 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416225 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416228 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0000185 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416237 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416238 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416239 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416251 | Fusobacterium periodonticum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416252 | Fusobacterium periodonticum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416256 | Fusobacterium russii | Eubacteria | Fusobacteria | Microaerophile |
| MMDBm0416224 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416260 | Fusobacterium ulcerans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416261 | Fusobacterium varium | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0001156 | Lachnospiraceae bacterium 5_1_63FAA | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002107 | Megasphaera elsdenii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810478 | Peptoniphilus harei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810479 | Peptoniphilus indolicus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810484 | Peptoniphilus lacrimalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805074 | Peptostreptococcus anaerobius | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805078 | Peptostreptococcus stomatis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000241 | Porphyromonas asaccharolytica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000242 | Porphyromonas endodontalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393499 | Porphyromonas somerae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393500 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0803106 | Pseudobutyrivibrio ruminis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0801900 | Pseudoramibacter alactolyticus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000257 | Roseburia hominis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803246 | Roseburia intestinalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803247 | Roseburia inulinivorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001136 | Ruminococcaceae bacterium D16 | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0808830 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808831 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0395050 | Tannerella forsythia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0001123 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |