Showing metabocard for Butyric acid (MMDBc0000010)

Record Information
Version1.0
StatusDetected and Quantified
Creation Date2020-10-27 23:24:39 UTC
Update Date2023-08-08 20:13:24 UTC
Metabolite IDMMDBc0000010
Metabolite Identification
Common NameButyric acid
DescriptionButyric acid, a four-carbon fatty acid, is formed in the human colon by bacterial fermentation of carbohydrates (including dietary fiber), and putatively suppresses colorectal cancer (CRC). Butyrate has diverse and apparently paradoxical effects on cellular proliferation, apoptosis and differentiation that may be either pro-neoplastic or anti-neoplastic, depending upon factors such as the level of exposure, availability of other metabolic substrate and the intracellular milieu. In humans, the relationship between luminal butyrate exposure and CRC has been examined only indirectly in case-control studies, by measuring fecal butyrate concentrations, although this may not accurately reflect effective butyrate exposure during carcinogenesis. Perhaps not surprisingly, results of these investigations have been mutually contradictory. The direct effect of butyrate on tumorigenesis has been assessed in a no. of in vivo animal models, which have also yielded conflicting results. In part, this may be explained by methodology: differences in the amount and route of butyrate administration, which are likely to significantly influence delivery of butyrate to the distal colon. (PMID: 16460475 ) Butyric acid is a carboxylic acid found in rancid butter, parmesan cheese, and vomit, and has an unpleasant odor and acrid taste, with a sweetish aftertaste (similar to ether). Butyric acid is a fatty acid occurring in the form of esters in animal fats and plant oils. Interestingly, low-molecular-weight esters of butyric acid, such as methyl butyrate, have mostly pleasant aromas or tastes. As a consequence, they find use as food and perfume additives. Butyrate is produced as end-product of a fermentation process solely performed by obligate anaerobic bacteria. It is a metabololite of Anaerostipes, Coprococcus, Eubacterium, Faecalibacterium and Roseburia (PMID: 12324374 ; PMID: 27446020 ).
Structure
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for #<Metabolite:0x00007f5a9c052398>


  Mrv1652303182019222D          

  6  5  0  0  0  0            999 V2000
    2.0479    0.0957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3332    0.5082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6187    0.0957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    0.5082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8103    0.0957    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    1.3333    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
M  END
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3D MOL for #<Metabolite:0x00007f5a9c052398>

HMDB0000039
     RDKit          3D
Butyric acid
 14 13  0  0  0  0  0  0  0  0999 V2000
   -1.9474   -0.2597   -0.0535 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5075   -0.4887   -0.5303 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3111    0.6047    0.1277 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7405    0.5191   -0.2380 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5206    1.3660    0.2409 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2280   -0.4601   -1.0840 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8876   -0.2730    1.0671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1723    0.7966   -0.3170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6450   -0.9830   -0.4636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2079   -1.4978   -0.1919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4882   -0.4024   -1.6313 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1661    0.5541    1.2156 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0952    1.5760   -0.2119 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9849   -1.0516   -0.7112 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  1  7  1  0
  1  8  1  0
  1  9  1  0
  2 10  1  0
  2 11  1  0
  3 12  1  0
  3 13  1  0
  6 14  1  0
M  END
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3D SDF for #<Metabolite:0x00007f5a9c052398>


  Mrv1652303182019222D          

  6  5  0  0  0  0            999 V2000
    2.0479    0.0957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3332    0.5082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6187    0.0957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    0.5082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8103    0.0957    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    1.3333    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0000010

> <DATABASE_NAME>
MIME

> <SMILES>
CCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C4H8O2/c1-2-3-4(5)6/h2-3H2,1H3,(H,5,6)

> <INCHI_KEY>
FERIUCNNQQJTOY-UHFFFAOYSA-N

> <FORMULA>
C4H8O2

> <MOLECULAR_WEIGHT>
88.1051

> <EXACT_MASS>
88.0524295

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
14

> <JCHEM_AVERAGE_POLARIZABILITY>
9.216958179769016

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
butanoic acid

> <ALOGPS_LOGP>
0.78

> <JCHEM_LOGP>
0.9217587976666666

> <ALOGPS_LOGS>
0.43

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.907922196332106

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
21.8716

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.39e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
butyric acid

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for #<Metabolite:0x00007f5a9c052398>

HMDB0000039
     RDKit          3D
Butyric acid
 14 13  0  0  0  0  0  0  0  0999 V2000
   -1.9474   -0.2597   -0.0535 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5075   -0.4887   -0.5303 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3111    0.6047    0.1277 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7405    0.5191   -0.2380 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5206    1.3660    0.2409 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2280   -0.4601   -1.0840 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8876   -0.2730    1.0671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1723    0.7966   -0.3170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6450   -0.9830   -0.4636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2079   -1.4978   -0.1919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4882   -0.4024   -1.6313 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1661    0.5541    1.2156 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0952    1.5760   -0.2119 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9849   -1.0516   -0.7112 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  1  7  1  0
  1  8  1  0
  1  9  1  0
  2 10  1  0
  2 11  1  0
  3 12  1  0
  3 13  1  0
  6 14  1  0
M  END
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PDB for #<Metabolite:0x00007f5a9c052398>

HEADER    PROTEIN                                 18-MAR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-MAR-20         0                                  
HETATM    1  C   UNK     0       3.823   0.179   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.489   0.949   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.155   0.179   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.179   0.949   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -1.513   0.179   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      -0.179   2.489   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4                                                            
MASTER        0    0    0    0    0    0    0    0    6    0   10    0
END
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3D PDB for #<Metabolite:0x00007f5a9c052398>

COMPND    HMDB0000039
HETATM    1  C1  UNL     1      -1.947  -0.260  -0.053  1.00  0.00           C  
HETATM    2  C2  UNL     1      -0.508  -0.489  -0.530  1.00  0.00           C  
HETATM    3  C3  UNL     1       0.311   0.605   0.128  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.741   0.519  -0.238  1.00  0.00           C  
HETATM    5  O1  UNL     1       2.521   1.366   0.241  1.00  0.00           O  
HETATM    6  O2  UNL     1       2.228  -0.460  -1.084  1.00  0.00           O  
HETATM    7  H1  UNL     1      -1.888  -0.273   1.067  1.00  0.00           H  
HETATM    8  H2  UNL     1      -2.172   0.797  -0.317  1.00  0.00           H  
HETATM    9  H3  UNL     1      -2.645  -0.983  -0.464  1.00  0.00           H  
HETATM   10  H4  UNL     1      -0.208  -1.498  -0.192  1.00  0.00           H  
HETATM   11  H5  UNL     1      -0.488  -0.402  -1.631  1.00  0.00           H  
HETATM   12  H6  UNL     1       0.166   0.554   1.216  1.00  0.00           H  
HETATM   13  H7  UNL     1      -0.095   1.576  -0.212  1.00  0.00           H  
HETATM   14  H8  UNL     1       2.985  -1.052  -0.711  1.00  0.00           H  
CONECT    1    2    7    8    9
CONECT    2    3   10   11
CONECT    3    4   12   13
CONECT    4    5    5    6
CONECT    6   14
END
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SMILES for #<Metabolite:0x00007f5a9c052398>

CCCC(O)=O
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INCHI for #<Metabolite:0x00007f5a9c052398>

InChI=1S/C4H8O2/c1-2-3-4(5)6/h2-3H2,1H3,(H,5,6)
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Synonyms
ValueSource
1-Butanoic acidChEBI
1-Butyric acidChEBI
1-Propanecarboxylic acidChEBI
4:0ChEBI
Acide butanoiqueChEBI
Acide butyriqueChEBI
Butanic acidChEBI
ButanoateChEBI
Butanoic acidChEBI
Butoic acidChEBI
ButtersaeureChEBI
C4:0ChEBI
CH3-[CH2]2-COOHChEBI
Ethylacetic acidChEBI
N-Butanoic acidChEBI
N-Butyric acidChEBI
Propanecarboxylic acidChEBI
Propylformic acidChEBI
ButyrateKegg
1-ButanoateGenerator
1-ButyrateGenerator
1-PropanecarboxylateGenerator
ButanateGenerator
ButoateGenerator
EthylacetateGenerator
N-ButanoateGenerator
N-ButyrateGenerator
PropanecarboxylateGenerator
PropylformateGenerator
Honey robberHMDB
Kyselina maselnaHMDB
Butyrate, magnesiumHMDB
Magnesium butyrateHMDB
Acid, butyricHMDB
Butyrate, sodiumHMDB
Dibutyrate, magnesiumHMDB
Magnesium dibutyrateHMDB
Sodium butyrateHMDB
Acid, butanoicHMDB
Butyric acid magnesium saltHMDB
Butyric acid, sodium saltHMDB
FA(4:0)HMDB
Butyric acidKEGG
Molecular FormulaC4H8O2
Average Mass88.1051
Monoisotopic Mass88.0524295
IUPAC Namebutanoic acid
Traditional Namebutyric acid
CAS Registry Number107-92-6
SMILES
CCCC(O)=O
InChI Identifier
InChI=1S/C4H8O2/c1-2-3-4(5)6/h2-3H2,1H3,(H,5,6)
InChI KeyFERIUCNNQQJTOY-UHFFFAOYSA-N