| MMDBm0002164 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572828 | Acinetobacter johnsonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572852 | Acinetobacter lwoffii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000007 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000008 | Acinetobacter radioresistens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0645907 | Actinomyces oris | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0646428 | Schaalia turicensis | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0645922 | Actinomyces urogenitalis | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0785760 | Aerococcus viridans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0422692 | Afipia birgiae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000015 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Anaerobe |
| MMDBm0000018 | Alistipes finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394800 | Alistipes indistinctus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000019 | Alistipes shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0001243 | Atopobium parvulum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000039 | Bacteroides clarus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392098 | Bacteroides faecis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392101 | Bacteroides fluxus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000045 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000046 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000047 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392196 | Bacteroides intestinalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395113 | Phocaeicola massiliensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392215 | Bacteroides pyogenes | Eubacteria | Bacteroidetes | Obligate anaerobe |
| MMDBm0392224 | Bacteroides salyersiae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392307 | Bacteroides sp. 9_1_42FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392237 | Bacteroides timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000057 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0648166 | Bifidobacterium scardovii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000090 | Bifidobacterium thermophilum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0423522 | Bradyrhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0663577 | Brevibacterium casei | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0663608 | Brevibacterium ravenspurgense | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0483496 | Burkholderia cepacia | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0798353 | Butyricicoccus pullicaecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0393350 | Butyricimonas synergistica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393353 | Butyricimonas virosa | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0513982 | Campylobacter gracilis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001373 | Campylobacter lari | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0514216 | Campylobacter rectus | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0881918 | Candidatus Nitrososphaera gargensis | Not Available | Thaumarchaeota | Aerobe |
| MMDBm0685945 | Cellulosimicrobium cellulans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001450 | Citrobacter koseri | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0798609 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802089 | Hungateiclostridium clariflavum | Eubacteria | Firmicutes | |
| MMDBm0808650 | Clostridium innocuum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001473 | Clostridium sticklandii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001480 | testosteroni | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0648904 | Corynebacterium amycolatum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0649002 | Corynebacterium glucuronolyticum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001490 | Corynebacterium kroppenstedtii5 | Eubacteria | Actinobacteria | Facultative aerobe |
| MMDBm0001529 | Delftia acidovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0665710 | Dermacoccus nishinomiyaensis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0510057 | Desulfovibrio desulfuricans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0649955 | Dietzia cinnamea | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001564 | Dyadobacter fermentans | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0000148 | Dysgonomonas gadei | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0557462 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002181 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0808643 | Eggerthia catenaformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0534723 | Enterobacter cancerogenus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0786738 | Enterococcus asini | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786742 | Enterococcus caccae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0801642 | Eubacterium cellulosolvens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805392 | Agathobaculum desmolans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0001104 | Anaerobutyricum hallii | Eubacteria | Firmicutes | |
| MMDBm0000172 | Eubacterium limosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806718 | Eubacterium saphenum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806720 | Eubacterium sulci | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805488 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805490 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000181 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002188 | Filifactor alocis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000187 | Gemella sanguinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0650438 | Gordonia rubripertincta | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650453 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0881919 | Halococcus morrhuae | Not Available | Euryarchaeota | Aerobe |
| MMDBm0001756 | Lactobacillus amylolyticus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0792696 | Ligilactobacillus animalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792735 | Lactobacillus coleohominis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001752 | Lactobacillus rhamnosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0491302 | Lautropia mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001779 | Leptotrichia buccalis | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0793164 | Leuconostoc lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0793152 | Leuconostoc gelidum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0809098 | Megamonas funiformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0881917 | Methanomassiliicoccus luminyensis | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0435884 | Methylobacterium mesophilicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001859 | Methylobacterium populi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0806691 | Mogibacterium timidum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001878 | Moraxella catarrhalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0503661 | Neisseria cinerea | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0503667 | Neisseria elongata | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0503763 | Neisseria macacae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0503982 | Neisseria mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000221 | Ochrobactrum anthropi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000222 | Ochrobactrum intermedium | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0723994 | Olsenella profusa | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0803068 | Oribacterium sinus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0394970 | Parabacteroides merdae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393900 | Paraprevotella clara | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393901 | Paraprevotella xylaniphila | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0805074 | Peptostreptococcus anaerobius | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805078 | Peptostreptococcus stomatis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809016 | Phascolarctobacterium succinatutens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000242 | Porphyromonas endodontalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0002369 | Porphyromonas gingivalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393926 | Prevotella bivia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393929 | Prevotella brevis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393932 | Prevotella bryantii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393934 | Prevotella buccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393945 | Prevotella corporis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393952 | Prevotella denticola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000245 | Prevotella denticola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393955 | Prevotella disiens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393977 | Prevotella loescheii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000248 | Prevotella melaninogenica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394000 | Prevotella oralis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000249 | Prevotella ruminicola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394039 | Prevotella timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394040 | Prevotella timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0692584 | Pseudopropionibacterium propionicum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0558116 | Proteus mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0580104 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002397 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580585 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580586 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580229 | Pseudomonas nitroreducens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002403 | Pseudomonas putida | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0801900 | Pseudoramibacter alactolyticus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0658815 | Rhodococcus hoagii | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000257 | Roseburia hominis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0685377 | Rothia aeria | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002480 | Rothia dentocariosa | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002479 | Rothia mucilaginosa | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0001105 | Ruminococcus callidus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805711 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805712 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0648739 | Scardovia inopinata | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0639412 | Schlesneria paludicola | Eubacteria | Planctomycetes | Facultative anaerobe |
| MMDBm0560533 | Serratia marcescens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0626640 | Silanimonas lenta | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002553 | Spirosoma linguale | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0794539 | Streptococcus infantis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794581 | Streptococcus mitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794617 | Streptococcus mutans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002630 | Streptococcus oralis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794814 | Streptococcus peroris | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002633 | Streptococcus pseudopneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000277 | Streptococcus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0796228 | Streptococcus vestibularis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0519718 | Succinivibrio dextrinosolvens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0395050 | Tannerella forsythia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0646445 | Trueperella pyogenes | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000763 | Prevotella bryantii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392190 | Bacteroides graminisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393911 | Prevotella albensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393941 | Prevotella conceptionensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393956 | Prevotella enoeca | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0658814 | Rhodococcus hoagii | Eubacteria | Actinobacteria | |
