MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0049930	(-)-Ureidoglycolate	C₃H₆N₂O₄ 134.0907	Human Feces	251	Co-metabolite	Not Available
MMDBc0049931	N-Succinyl-LL-2,6-diaminoheptanedioate	C₁₁H₁₈N₂O₇ 290.2698	Human Feces	328	Co-metabolite	Not Available
MMDBc0049932	Carbamate	CH₃NO₂ 61.04	Human Feces Human Neuron Human Placenta	344	Co-metabolite	Not Available
MMDBc0049933	4-Aminobenzoate	C₇H₇NO₂ 137.136	Human Feces Human Urine Human Blood Human Epidermis Human Fibroblasts Human Intestine Human Liver Human Placenta Human Prostate	691	Co-metabolite	Not Available
MMDBc0049934	Dihydroneopterin	C₉H₁₃N₅O₄ 255.2306	Human Feces	709	Co-metabolite	Not Available
MMDBc0049935	Dihydropteroate	C₁₄H₁₄N₆O₃ 314.2994	Human Feces	842	Co-metabolite	Not Available
MMDBc0049936	Glycyl-L-tyrosine	C₁₁H₁₄N₂O₄ 238.243	Human Feces Human Saliva	864	Co-metabolite	Not Available
MMDBc0049937	Glycyl-L-asparagine	C₆H₁₁N₃O₄ 189.1692	Human Feces	864	Co-metabolite	Not Available
MMDBc0049938	Glycyl-L-aspartate	C₆H₁₀N₂O₅ 190.154	Human Feces	864	Co-metabolite	Not Available
MMDBc0049939	Glycyl-L-glutamine	C₇H₁₃N₃O₄ 203.1958	Human Feces	864	Co-metabolite	Not Available
MMDBc0049940	Glycyl-L-glutamate	C₇H₁₂N₂O₅ 204.182	Human Feces	864	Co-metabolite	Not Available
MMDBc0049941	(3S)-3,6-Diaminohexanoate	C₆H₁₄N₂O₂ 146.1876	Human Feces	215	Co-metabolite	Not Available
MMDBc0049942	5-Aminopentanamide	C₅H₁₂N₂O 116.1616	Human Feces	21	Co-metabolite	Not Available
MMDBc0049943	1,5-Diaminopentane	C₅H₁₄N₂ 102.1781	Human Feces Human Blood Human Urine Human Saliva Human Epidermis Human Intestine Human Prostate	412	Co-metabolite	Not Available
MMDBc0049944	N-Carbamoylputrescine	C₅H₁₃N₃O 131.1762	Human Feces	361	Co-metabolite	Not Available
MMDBc0049945	D-Galacturonate	C₆H₁₀O₇ 194.1394	Human Feces	468	Co-metabolite	Not Available
MMDBc0049946	1-(5-Phosphoribosyl)-AMP	C₁₅H₂₃N₅O₁₄P₂ 559.3157	Human Feces	648	Co-metabolite	Not Available
MMDBc0049947	Shikimate	C₇H₁₀O₅ 174.1513	Human Feces Human Urine Human Blood	669	Co-metabolite	Not Available
MMDBc0049949	6-phosphonato-5-dehydro-2-deoxy-D-gluconate(3-)	C₆H₁₁O₉P 258.119	Human Feces	169	Co-metabolite	Not Available
MMDBc0049950	D-Malate	C₄H₆O₅ 134.0874	Human Feces	101	Co-metabolite	Not Available
MMDBc0049951	D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate	C₆H₁₁N₂O₆P 238.1351	Human Feces	1303	Co-metabolite	Not Available
MMDBc0049952	P1,P4-Bis(5'-uridyl) tetraphosphate	C₁₈H₂₆N₄O₂₃P₄ 790.3071	Human Feces	216	Co-metabolite	Not Available
MMDBc0049953	cis-4-Hydroxy-D-proline	C₅H₉NO₃ 131.1299	Human Feces	108	Co-metabolite	Not Available
MMDBc0049954	2-Hydroxyhepta-2-4-dienedioate	C₇H₆O₅ 170.121	Human Feces	118	Co-metabolite	Not Available
MMDBc0049956	2,3,4,5-Tetrahydrodipicolinate	C₇H₉NO₄ 171.1507	Human Feces	831	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0002426	Pyrococcus sp. NA2	Archaea	Euryarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	0
MMDBm0001403	Candidatus Zinderia insecticola CARI	Eubacteria	Proteobacteria	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	3
MMDBm0002751	Vulcanisaeta moutnovskia 768-28	Archaea	Crenarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	7
MMDBm0804868	Clostridioides difficile NAP07	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	737
MMDBm0804869	Clostridioides difficile NAP08	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	738
MMDBm0000265	Ruminococcus sp. SR1/5	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Pathogenic	650
MMDBm0646414	Schaalia cardiffensis F0333	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	631
MMDBm0805392	Agathobaculum desmolans ATCC 43058	Eubacteria	Firmicutes	Obligate anaerobe	Not Available	Human Gut	Non-pathogenic	672
MMDBm0646417	Schaalia georgiae DSM 6843	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	504
MMDBm0808723	Faecalicoccus pleomorphus DSM 20574	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	620
MMDBm0392215	Bacteroides pyogenes DSM 20611 = JCM 6294	Eubacteria	Bacteroidetes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	639
MMDBm0809759	Veillonella seminalis ACS-216-V-Col6b	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	676
MMDBm0803361	Tyzzerella nexilis DSM 1787	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	612
MMDBm0808748	Holdemanella biformis DSM 3989	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	550
MMDBm0810288	Anaerococcus hydrogenalis DSM 7454	Eubacteria	Firmicutes	Obligate anaerobe	Weakly saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	564
MMDBm0001850	Methanothermobacter marburgensis str. Marburg	Archaea	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	71
MMDBm0000833	Methanothermobacter marburgensis	Not Available	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	0
MMDBm0562753	Yersinia rohdei	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Large intestine	Pathogenic	11
MMDBm0562754	Yersinia rohdei ATCC 43380	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	892
MMDBm0882240	Ruminococcaceae bacterium	Eubacteria	Firmicutes	Obligate anaerobe	Uncharacterized	Not Available	Non-pathogenic	0
MMDBm0805202	Terrisporobacter glycolicus ATCC 14880 = DSM 1288	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	745
MMDBm0808535	Absiella dolichum DSM 3991	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	507
MMDBm0808542	Bulleidia extructa	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human	Non-pathogenic	3
MMDBm0808543	Bulleidia extructa W1219	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	530
MMDBm0801127	Hungatella hathewayi 12489931	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	750

Host and Site

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