MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0049957	(2R)-O-phospho-3-sulfolactic acid	C₃H₇O₉PS 250.11	Human Feces	86	Co-metabolite	Not Available
MMDBc0049958	2,5-Dioxopentanoate	C₅H₆O₄ 130.0987	Human Feces	492	Co-metabolite	Not Available
MMDBc0049959	5-Carboxymethyl-2-hydroxymuconate	C₈H₈O₇ 216.145	Human Feces	93	Co-metabolite	Not Available
MMDBc0049960	2,3-Dihydroxybenzoate	C₇H₆O₄ 154.121	Human Feces Human Blood Human Urine	20	Co-metabolite	Not Available
MMDBc0049961	Protocatechuate	C₇H₆O₄ 154.121	Human Feces Human Urine Human Blood Human Fibroblasts Human Testis	3	Co-metabolite	Not Available
MMDBc0049963	2,3-Dihydrodipicolinate	C₇H₇NO₄ 169.1348	Human Feces	636	Co-metabolite	Not Available
MMDBc0049964	Iminoaspartate	C₄H₅NO₄ 131.0868	Human Feces	569	Co-metabolite	Not Available
MMDBc0049965	N-Formyl-L-glutamate	C₆H₉NO₅ 175.1394	Human Feces	89	Co-metabolite	Not Available
MMDBc0049966	2-Oxohept-3-ene-1,7-dioate	C₇H₈O₅ 172.136	Human Feces	104	Co-metabolite	Not Available
MMDBc0049968	Mucolactone	C₆H₆O₄ 142.11	Human Feces	114	Co-metabolite	Not Available
MMDBc0049969	N2-Succinyl-L-glutamate 5-semialdehyde	C₉H₁₃NO₆ 231.2026	Human Feces	99	Co-metabolite	Not Available
MMDBc0049970	N-Succinyl-2-L-amino-6-oxoheptanedioate	C₁₁H₁₅NO₈ 289.2387	Human Feces	344	Co-metabolite	Not Available
MMDBc0049971	Phenylpropanoate	C₉H₁₀O₂ 150.1745	Human Feces Human Blood Human Urine Human Saliva Human Kidney Human Liver	147	Co-metabolite	Not Available
MMDBc0049972	Melilotate	C₉H₁₀O₃ 166.1739	Human Feces	30	Co-metabolite	Not Available
MMDBc0049973	Indole-3-propionate	C₁₁H₁₁NO₂ 189.2105	Human Feces Human Blood	6	Co-metabolite	Not Available
MMDBc0049974	2-Hydroxy-3-oxopropanoate	C₃H₄O₄ 104.0615	Human Feces	502	Co-metabolite	Not Available
MMDBc0049975	2,4-Dihydroxyhept-2-enedioate	C₇H₈O₆ 188.136	Human Feces	107	Co-metabolite	Not Available
MMDBc0049976	D-Mannitol	C₆H₁₄O₆ 182.1718	Human Feces Human Cerebrospinal Fluid (CSF) Human Blood Human Urine Human Brain Human Epidermis Human Placenta	238	Co-metabolite	Not Available
MMDBc0049977	2-Dehydro-3-deoxy-D-gluconate	C₆H₁₀O₆ 178.14	Human Feces	514	Co-metabolite	Not Available
MMDBc0049978	Sorbose 1-phosphate	C₆H₁₃O₉P 260.1358	Human Feces	50	Co-metabolite	Not Available
MMDBc0049979	Levanbiose	C₁₂H₂₂O₁₁ 342.2965	Human Feces	5	Co-metabolite	Not Available
MMDBc0049980	Arbutin	C₁₂H₁₆O₇ 272.2512	Human Feces	574	Co-metabolite	Not Available
MMDBc0049981	1-Pyrroline-4-hydroxy-2-carboxylate	C₅H₇NO₃ 129.114	Human Feces	438	Co-metabolite	Not Available
MMDBc0049982	2-deoxy-5-keto-D-gluconic acid	C₆H₁₀O₆ 178.14	Human Feces	145	Co-metabolite	Not Available
MMDBc0049983	D-Sorbitol 6-phosphate	C₆H₁₅O₉P 262.1517	Human Feces Human Blood	538	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0002426	Pyrococcus sp. NA2	Archaea	Euryarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	0
MMDBm0001403	Candidatus Zinderia insecticola CARI	Eubacteria	Proteobacteria	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	3
MMDBm0002751	Vulcanisaeta moutnovskia 768-28	Archaea	Crenarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	7
MMDBm0804868	Clostridioides difficile NAP07	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	737
MMDBm0804869	Clostridioides difficile NAP08	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	738
MMDBm0000265	Ruminococcus sp. SR1/5	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Pathogenic	650
MMDBm0646414	Schaalia cardiffensis F0333	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	631
MMDBm0805392	Agathobaculum desmolans ATCC 43058	Eubacteria	Firmicutes	Obligate anaerobe	Not Available	Human Gut	Non-pathogenic	672
MMDBm0646417	Schaalia georgiae DSM 6843	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	504
MMDBm0808723	Faecalicoccus pleomorphus DSM 20574	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	620
MMDBm0392215	Bacteroides pyogenes DSM 20611 = JCM 6294	Eubacteria	Bacteroidetes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	639
MMDBm0809759	Veillonella seminalis ACS-216-V-Col6b	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	676
MMDBm0803361	Tyzzerella nexilis DSM 1787	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	612
MMDBm0808748	Holdemanella biformis DSM 3989	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	550
MMDBm0810288	Anaerococcus hydrogenalis DSM 7454	Eubacteria	Firmicutes	Obligate anaerobe	Weakly saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	564
MMDBm0001850	Methanothermobacter marburgensis str. Marburg	Archaea	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	71
MMDBm0000833	Methanothermobacter marburgensis	Not Available	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	0
MMDBm0562753	Yersinia rohdei	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Large intestine	Pathogenic	11
MMDBm0562754	Yersinia rohdei ATCC 43380	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	892
MMDBm0882240	Ruminococcaceae bacterium	Eubacteria	Firmicutes	Obligate anaerobe	Uncharacterized	Not Available	Non-pathogenic	0
MMDBm0805202	Terrisporobacter glycolicus ATCC 14880 = DSM 1288	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	745
MMDBm0808535	Absiella dolichum DSM 3991	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	507
MMDBm0808542	Bulleidia extructa	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human	Non-pathogenic	3
MMDBm0808543	Bulleidia extructa W1219	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	530
MMDBm0801127	Hungatella hathewayi 12489931	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	750

Host and Site

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