| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0002690 | Thermococcus kodakarensis KOD1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001824 | Methanococcoides burtonii DSM 6242 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002642 | Sulfolobus tokodaii str. 7 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002423 | Pyrococcus abyssi GE5 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002577 | Staphylothermus marinus F1 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002425 | Pyrococcus furiosus DSM 3638 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001843 | Methanosarcina acetivorans C2A | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002691 | Thermococcus onnurineus NA1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001844 | Methanosarcina mazei Go1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002692 | Thermococcus gammatolerans EJ3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001845 | Methanosarcina barkeri str. Fusaro | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000243 | Porphyromonas gingivalis ATCC 33277 | Bacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000157 | Enterococcus hirae ATCC 9790 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001713 | Idiomarina loihiensis L2TR | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0809578 | Dialister invisus DSM 15470 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0766572 | Listeria monocytogenes Finland 1998 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0792746 | Lactobacillus mucosae LM1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001599 | Escherichia coli ED1a | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0692720 | Cutibacterium granulosum DSM 20700 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0393499 | Porphyromonas somerae DSM 23386 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000278 | Streptococcus sp. I-P16 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
