MiMeDB: Staphylococcus epidermidis (MMDBm0000425)

Microbe Identification

Microbe name

Staphylococcus epidermidis

NCBI Taxonomy ID

1282

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Firmicutes

Class

Bacilli

Order

Bacillales

Family

Staphylococcaceae

Genus

Staphylococcus

Species

epidermidis

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Cocci

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen preference

Facultative anaerobe

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Data Source	Reference
Human			Human Oral Microbiome Database (HOMD)	20624719
Human			Human Microbiome Project	28953883
Human			Human Microbiome Project	28953883
Human			Human Microbiome Project	28953883
Human	Fornix		BacDive	34718743
Human	Vagina		BacDive	34718743
Human	Skin		BacDive	34718743
Human	Nasal cavity		BacDive	34718743
Human	Fornix		BacDive	34718743
Human	Nasopharynx		Disbiome	26492486
Human	Oral cavity	Saliva	Disbiome	31452955
Human	Skin		Disbiome	31883828

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference
Human	Cystic fibrosis		Elevated	Disbiome	26492486
Human	Systemic Lupus Erythematosus		Elevated	Disbiome	31883828

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0013081	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	7,8-dihydrofolate monoglutamate	Bifunctional dihydrofolate reductase-thymidylate synthase	Reduction; Synthesis	RHEA	34755880
MMDBr0013224	Hydrogen Ion	diphosphate	Bifunctional protein GlmU	N-Acetylation; Phosphorylation; Isomerization	RHEA	34755880
MMDBr0013248	Acetyl-CoA	CoA	Bifunctional protein GlmU	N-Acetylation	RHEA	34755880
MMDBr0013382	(6S)-5,6,7,8-tetrahydrofolic acid	7,8-dihydrofolate monoglutamate	Bifunctional dihydrofolate reductase-thymidylate synthase	Reduction	RHEA	34755880
MMDBr0013886	Carbamoylphosphate	Hydrogen Ion	Ornithine carbamoyltransferase	Transfer of a carbamoyl group	RHEA	34755880
MMDBr0013978	Hydrogen peroxide	Water	Bromoperoxidase-catalase	Synthesis	RHEA	34755880
MMDBr0014021	Hydrogen Ion	Hydrogen peroxide	Methanobactin mb-OB3b	Dismutation	RHEA	34755880
MMDBr0014022	Hydrogen Ion	Hydrogen peroxide	Superoxide dismutase [Mn/Fe]	Dismutation	RHEA	34755880
MMDBr0014035	Adenosine triphosphate	ADP	Guanylate kinase	Phosphorylation	RHEA	34755880
MMDBr0024368	Adenosine triphosphate	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024586	L-Serine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0024860	beta-D-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-D-isoglutaminyl-L-Lys-(N(6)-Gly)-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate	Hydrogen Ion	Aminoacyltransferase FemA	Acylation	RHEA	34755880
MMDBr0024861	MurNAc-L-Ala-D-isoglutaminyl-L-Lys-(N(6)-tri-Gly)-D-Ala-D-Ala-diphospho-di-trans,octa-cis-undecaprenyl-GlcNAc	Hydrogen Ion	Aminoacyltransferase FemB	Acylation	RHEA	34755880
MMDBr0024908	D-Glucose	L-Histidine	PTS system glucose-specific EIICBA component	Phosphorylation	RHEA	34755880
MMDBr0025091	S-Adenosylmethionine	Hydrogen Ion	rRNA adenine N-6-methyltransferase	Methylation	RHEA	34755880
MMDBr0025237	L-Threonine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880

Genome Data

Genome Link

MMDBm0000425

Genome Length

2501738 bp

# Predicted Proteins

2382

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-25 17:21:34 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_CP035288