MiMeDB: Rhodococcus erythropolis (MMDBm0658779)

Microbe Identification

Microbe name

Rhodococcus erythropolis

NCBI Taxonomy ID

1833

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Actinobacteria

Class

Actinobacteria

Order

Corynebacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Species

erythropolis

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Flagellar presence

Not Available

Number of membranes

Oxygen preference

Aerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

Multiple

Biotic relationship

Free living

Cell arrangement

Filaments

Sporulation

Filaments

Metabolism

Sulfate reducer - Magnetite production

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Skin			Disbiome	31883828

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference
Human	Systemic Lupus Erythematosus		Reduced	Disbiome	31883828

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012928	limonene 1,2-epoxide	limonene-1,2-diol	Limonene-1,2-epoxide hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0013413	Ethanolamine	Acetaldehyde	Ethanolamine ammonia-lyase large subunit	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013797	barbiturate	3-oxo-3-ureidopropanoic acid	Barbiturase	Reversible amidohydrolysis	RHEA	34755880
MMDBr0014165	Precorrin 4	Precorrin 5	Precorrin-4 C(11)-methyltransferase	Methylation	RHEA	34755880
MMDBr0014328	precorrin-6B	precorrin-6A	Precorrin-6A reductase	Reduction	RHEA	34755880
MMDBr0014372	Hydrogen carbonate	(S)-Methylmalonyl-CoA	Propionyl-CoA carboxylase, biotin carboxylase and biotin-carboxyl carrier subunit	Carboxylation	RHEA	34755880
MMDBr0014589	(1S,5S)-carveol	D-Carvone	(-)-trans-carveol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014614	D-Limonene	limonene 1,2-epoxide	Limonene 1,2-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0014615	D-Limonene	limonene 1,2-epoxide	Limonene 1,2-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0014619	L-3,4-Dihydroxybutan-2-one 4-phosphate	6,7-Dimethyl-8-(1-D-ribityl)lumazine	6,7-dimethyl-8-ribityllumazine synthase	Synthesis	RHEA	34755880
MMDBr0015147	Menthone	(4R,7S)-7-isopropyl-4-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0015148	Menthone	(4R,7S)-7-isopropyl-4-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0015153	4-isopropenyl-7-methyloxepan-2-one	6-hydroxy-3-isopropenylheptanoic acid	Monoterpene epsilon-lactone hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0015161	7-isopropyl-4-methyloxepan-2-one	6-hydroxy-3,7-dimethyloctanoic acid	Monoterpene epsilon-lactone hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0015593	2-n-heptyl-4-hydroxyquinoline	2-heptyl-3-hydroxy-4-quinolone	2-heptyl-3-hydroxy-4(1H)-quinolone synthase	Synthesis	RHEA	34755880
MMDBr0015594	2-n-heptyl-4-hydroxyquinoline	2-heptyl-3-hydroxy-4-quinolone	2-heptyl-3-hydroxy-4(1H)-quinolone synthase	Synthesis	RHEA	34755880
MMDBr0016632	L-Gulonate	(4R,7R)-4-isopropenyl-7-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016633	L-Gulonate	(4R,7R)-4-isopropenyl-7-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016634	(1S,4R)-isodihydrocarvone	(3S,6R)-6-isopropenyl-3-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016635	(1S,4R)-isodihydrocarvone	(3S,6R)-6-isopropenyl-3-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016655	(1S,4R)-1-hydroxylimonen-2-one	(4R,7R)-7-hydroxy-4-isopropenyl-7-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016656	(1S,4R)-1-hydroxylimonen-2-one	(4R,7R)-7-hydroxy-4-isopropenyl-7-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016657	(1R,4S)-1-hydroxylimonen-2-one	(4S,7S)-7-hydroxy-4-isopropenyl-7-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016658	(1R,4S)-1-hydroxylimonen-2-one	(4S,7S)-7-hydroxy-4-isopropenyl-7-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016759	4-sulfanylbutanoic acid	4,4'-disulfanyldibutanoic acid	4,4'-dithiodibutanoate disulfide reductase	Reduction	RHEA	34755880
MMDBr0016760	(1S,4R)-menthone	(4S,7R)-7-isopropyl-4-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016761	(1S,4R)-menthone	(4S,7R)-7-isopropyl-4-methyloxepan-2-one	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016768	1-hydroxylimonen-2-one	3-isopropenyl-6-oxoheptanoic acid	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016769	1-hydroxylimonen-2-one	3-isopropenyl-6-oxoheptanoic acid	Monocyclic monoterpene ketone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0017053	2-heptyl-3-hydroxy-4-quinolone	Carbon monoxide	2-heptyl-3-hydroxy-4(1H)-quinolone dioxygenase	Oxygenation	RHEA	34755880
MMDBr0017054	2-heptyl-3-hydroxy-4-quinolone	Carbon monoxide	2-heptyl-3-hydroxy-4(1H)-quinolone dioxygenase	Oxygenation	RHEA	34755880
MMDBr0017055	N-octanoylanthranilate	2-Aminobenzoic acid	Probable N-octanoylanthranilate hydrolase AqdA1	Hydrolysis of bond	RHEA	34755880
MMDBr0017056	N-octanoylanthranilate	2-Aminobenzoic acid	Probable N-octanoylanthranilate hydrolase AqdA1	Hydrolysis of bond	RHEA	34755880
MMDBr0024526	Water	Hydrogen Ion	Aldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024800	Aromatic oxo acid	(R)-Carvone	(-)-trans-carveol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024805	D-Limonene	limonene 1,2-epoxide	Limonene 1,2-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024806	D-Limonene	limonene 1,2-epoxide	Limonene 1,2-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024918	Ethanol	Acetaldehyde	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024919	Methanol	Formaldehyde	Methanol:N,N-dimethyl-4-nitrosoaniline oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0025292	N,N-dimethyl-4-nitrosoaniline	4-(hydroxylamino)-N,N-dimethylaniline	NDMA-dependent alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0036085	N-Acetyl-L-aspartic acid	Acetic acid	Acylamidase	Hydrolysis	RHEA	34755880
MMDBr0036086	N-Acetyl-L-glutamic acid	Acetic acid	Acylamidase	Hydrolysis	RHEA	34755880
MMDBr0036101	N-Acetyl-L-glutamyl 5-phosphate	Acetic acid	Acylamidase	Hydrolysis	RHEA	34755880
MMDBr0036102	N-Acetyl-L-phenylalanine	Acetic acid	Acylamidase	Hydrolysis	RHEA	34755880
MMDBr0036103	N-Acetyl-L-tyrosine	Acetic acid	Acylamidase	Hydrolysis	RHEA	34755880
MMDBr0036104	Homocarnosine	gamma-Aminobutyric acid	Acylamidase	Hydrolysis	RHEA	34755880
MMDBr0036105	2,3-Dihydroxybenzoylserine	L-Serine	Acylamidase	Hydrolysis	RHEA	34755880
MMDBr0036106	N2-succinyl-L-arginine	Succinic acid	Acylamidase	Hydrolysis	RHEA	34755880
MMDBr0036107	N-Formyl-L-methionine	L-Methionine	Acylamidase	Hydrolysis	RHEA	34755880

Genome Data

Genome Link

MMDBm0658779

Genome Length

6325961 bp

# Predicted Proteins

6003

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-28 03:48:24 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_CP007255