| MMDBm0001188 | Acinetobacter baumannii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002164 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572812 | Acinetobacter haemolyticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000007 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000008 | Acinetobacter radioresistens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001191 | Actinobacillus pleuropneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0422692 | Afipia birgiae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000011 | Aggregatibacter aphrophilus | Eubacteria | Proteobacteria | Facultative |
| MMDBm0000018 | Alistipes finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394805 | Alistipes onderdonkii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394807 | Alistipes putredinis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000019 | Alistipes shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0645212 | Acetomicrobium hydrogeniformans | Eubacteria | Synergistetes | |
| MMDBm0766846 | Aneurinibacillus aneurinilyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000024 | Bacillus altitudinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001274 | amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000025 | Bacillus amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730668 | Bacillus atrophaeus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001264 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730439 | Bacillus endophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761185 | Cytobacillus firmus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730452 | Bacillus flexus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000028 | Bacillus halodurans | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730482 | Bacillus infantis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001255 | Bacillus licheniformis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001269 | Bacillus megaterium | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730692 | Bacillus mojavensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730563 | Bacillus pumilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730698 | Bacillus sonorensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730186 | Bacillus thuringiensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000032 | Bacillus timonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000033 | Bacillus vallismortis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0392079 | Bacteroides caccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392086 | Bacteroides cellulosilyticus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395112 | Phocaeicola dorei | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392098 | Bacteroides faecis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392100 | Bacteroides finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392101 | Bacteroides fluxus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000044 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000045 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000046 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000047 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392196 | Bacteroides intestinalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395113 | Phocaeicola massiliensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392206 | Bacteroides oleiciplenus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392208 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392248 | Bacteroides xylanisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392211 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392215 | Bacteroides pyogenes | Eubacteria | Bacteroidetes | Obligate anaerobe |
| MMDBm0392224 | Bacteroides salyersiae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392261 | Bacteroides sp. 1_1_14 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392262 | Bacteroides sp. 1_1_30 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000054 | Bacteroides thetaiotaomicron | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392276 | Bacteroides sp. 2_1_22 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000975 | Bacteroides sp. 2_1_33B | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394980 | Parabacteroides sp. 2_1_7 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392277 | Bacteroides sp. 2_2_4 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394979 | Parabacteroides sp. 20_3 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392289 | Bacteroides sp. 3_1_19 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392290 | Bacteroides sp. 3_1_23 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392291 | Bacteroides sp. 3_1_33FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392292 | Bacteroides sp. 3_1_40A | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392293 | Bacteroides sp. 3_2_5 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392300 | Bacteroides sp. 4_1_36 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392301 | Bacteroides sp. 4_3_47FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392307 | Bacteroides sp. 9_1_42FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392454 | Bacteroides sp. D1 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392455 | Bacteroides sp. D2 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392456 | Bacteroides sp. D20 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392457 | Bacteroides sp. D22 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000053 | Bacteroides stercoris | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000055 | thetaiotaomicron | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392237 | Bacteroides timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392239 | Bacteroides uniformis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000057 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392247 | Bacteroides xylanisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000058 | Bacteroides xylanisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0648002 | Bifidobacterium animalis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0802304 | Blautia producta | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0423522 | Bradyrhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0766910 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0766911 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000096 | Brevibacillus borstelensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000097 | Brevibacillus brevis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0393350 | Butyricimonas synergistica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393353 | Butyricimonas virosa | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0533363 | Cedecea davisae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001417 | Clostridium lentocellum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000882 | Cetobacterium somerae | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0000105 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533435 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001146 | Clostridiales bacterium 1_7_47FAA | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0802699 | Enterocloster asparagiformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805019 | Paraclostridium bifermentans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0802705 | Enterocloster bolteae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798785 | Clostridium cadaveris | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802708 | Enterocloster citroniae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000125 | Enterocloster clostridioformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001470 | Clostridium difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0804868 | Clostridioides difficile | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0804869 | Clostridioides difficile | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000112 | Clostridioides difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805202 | Terrisporobacter glycolicus | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0802892 | Clostridium hylemonae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802992 | Lacrimispora indolis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802894 | Clostridium methoxybenzovorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802899 | Clostridium scindens | Eubacteria | Firmicutes | Aerotolerant |
| MMDBm0805008 | Paeniclostridium sordellii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0001476 | Clostridium sp. SY8519 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001473 | Clostridium sticklandii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806095 | Clostridium viride | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001501 | Cronobacter sakazakii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0510057 | Desulfovibrio desulfuricans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0510126 | Desulfovibrio sp. 3_1_syn3 | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0000148 | Dysgonomonas gadei | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0002181 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001574 | Enterobacter asburiae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534735 | Enterobacter cloacae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534800 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534801 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0553036 | Enterobacteriaceae bacterium 9_2_54FAA | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000688 | Enterococcus saccharolyticus | Eubacteria | Firmicutes | |
| MMDBm0540120 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533123 | Atlantibacter hermannii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0801634 | Eubacterium ramulus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806718 | Eubacterium saphenum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806720 | Eubacterium sulci | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805538 | Flavonifractor plautii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0416185 | Fusobacterium gonidiaformans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416186 | Fusobacterium gonidiaformans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416194 | Fusobacterium mortiferum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416200 | Fusobacterium necrophorum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416223 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416225 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416228 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0000185 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416237 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416238 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416239 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416251 | Fusobacterium periodonticum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416252 | Fusobacterium periodonticum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416256 | Fusobacterium russii | Eubacteria | Fusobacteria | Microaerophile |
| MMDBm0416224 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416260 | Fusobacterium ulcerans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416261 | Fusobacterium varium | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0609478 | Grimontia hollisae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000190 | Haemophilus parainfluenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0557502 | Hafnia alvei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544444 | Klebsiella michiganensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533093 | Leminorella grimontii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001794 | Lysinibacillus sphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0881917 | Methanomassiliicoccus luminyensis | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0435884 | Methylobacterium mesophilicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001858 | Methylobacterium radiotolerans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000002 | Micromonospora aurantiaca | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001878 | Moraxella catarrhalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0557847 | Morganella morganii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0564358 | Nevskia ramosa | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0393374 | Odoribacter laneus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000223 | Odoribacter splanchnicus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0723994 | Olsenella profusa | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000226 | Paenibacillus alvei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000227 | Paenibacillus barengoltzii | Eubacteria | Firmicutes | |
| MMDBm0555709 | Pantoea agglomerans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000232 | Parabacteroides distasonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000233 | Parabacteroides goldsteinii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394966 | Parabacteroides gordonii | Eubacteria | Bacteroidetes | |
| MMDBm0394968 | Parabacteroides johnsonii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394970 | Parabacteroides merdae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395005 | Parabacteroides sp. D13 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393900 | Paraprevotella clara | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393901 | Paraprevotella xylaniphila | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000241 | Porphyromonas asaccharolytica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000242 | Porphyromonas endodontalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0002369 | Porphyromonas gingivalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393499 | Porphyromonas somerae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393500 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0558122 | Proteus penneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0805717 | Ruminococcus gauvreauii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0560531 | Serratia liquefaciens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002232 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0779406 | Staphylococcus cohnii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0626692 | Stenotrophomonas maltophilia | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0395050 | Tannerella forsythia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0557387 | Tatumella ptyseos | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0610808 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610810 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002190 | Vibrio furnissii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002741 | Vibrio parahaemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562388 | Yersinia bercovieri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000464 | Bacillus mycoides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0000923 | Bacteroides nordii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0001035 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001123 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392190 | Bacteroides graminisolvens | Eubacteria | Bacteroidetes | Anaerobe |