| MMDBm0646422 | Schaalia odontolytica | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0422692 | Afipia birgiae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000012 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0393872 | Alloprevotella tannerae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0645212 | Acetomicrobium hydrogeniformans | Eubacteria | Synergistetes | |
| MMDBm0802249 | Anaerostipes caccae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805428 | Anaerotruncus colihominis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001264 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0392079 | Bacteroides caccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392086 | Bacteroides cellulosilyticus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000044 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000045 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000046 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000047 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392208 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392248 | Bacteroides xylanisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392211 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000053 | Bacteroides stercoris | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000055 | thetaiotaomicron | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392239 | Bacteroides uniformis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000057 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000064 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0647988 | Bifidobacterium angulatum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0002290 | Bifidobacterium animalis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648023 | Bifidobacterium bifidum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000067 | Bifidobacterium bifidum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648041 | Bifidobacterium breve | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648061 | Bifidobacterium catenulatum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648069 | Bifidobacterium coryneforme | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648082 | Bifidobacterium gallicum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000075 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648095 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000078 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000079 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648107 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648097 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000076 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648137 | Bifidobacterium pseudocatenulatum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0399995 | Capnocytophaga sputigena | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0798782 | Clostridium butyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798783 | Clostridium butyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803361 | Tyzzerella nexilis | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001094 | Erysipelatoclostridium ramosum | Eubacteria | Firmicutes | |
| MMDBm0802901 | Clostridium symbiosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802609 | Coprococcus comes | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802611 | Coprococcus eutactus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001501 | Cronobacter sakazakii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0802657 | Dorea longicatena | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001564 | Dyadobacter fermentans | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0000148 | Dysgonomonas gadei | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0000194 | Klebsiella aerogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002278 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787115 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787127 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787132 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001575 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787486 | Enterococcus faecium | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000688 | Enterococcus saccharolyticus | Eubacteria | Firmicutes | |
| MMDBm0808535 | Amedibacillus dolichus | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0802216 | Anaerobutyricum hallii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0001104 | Anaerobutyricum hallii | Eubacteria | Firmicutes | |
| MMDBm0805489 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0805488 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000180 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805538 | Flavonifractor plautii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0544716 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0790420 | Lactobacillus acidophilus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001737 | Lactobacillus acidophilus | Eubacteria | Firmicutes | Anaerobe; microaerophile |
| MMDBm0792733 | Lactobacillus antri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001741 | Lactobacillus casei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001748 | Lactobacillus casei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001739 | Lactobacillus delbrueckii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001743 | Lactobacillus gasseri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792620 | Lentilactobacillus hilgardii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001751 | Lactiplantibacillus plantarum | Eubacteria | Firmicutes | Microaerophilic |
| MMDBm0790394 | Lactiplantibacillus plantarum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001734 | Lactiplantibacillus plantarum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001752 | Lactobacillus rhamnosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792726 | Ligilactobacillus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001736 | Ligilactobacillus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790617 | Lactobacillus ultunensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0803001 | Marvinbryantia formatexigens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000216 | Megamonas hypermegale | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001872 | Micrococcus luteus | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000002 | Micromonospora aurantiaca | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000232 | Parabacteroides distasonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393929 | Prevotella brevis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393932 | Prevotella bryantii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393934 | Prevotella buccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393952 | Prevotella denticola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000245 | Prevotella denticola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393954 | Prevotella disiens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393955 | Prevotella disiens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000247 | Prevotella intermedia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393977 | Prevotella loescheii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000248 | Prevotella melaninogenica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393997 | Prevotella nigrescens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394000 | Prevotella oralis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000249 | Prevotella ruminicola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394042 | Prevotella veroralis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000257 | Roseburia hominis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803246 | Roseburia intestinalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803247 | Roseburia inulinivorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0648739 | Scardovia inopinata | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0471855 | Sphingomonas paucimobilis | Eubacteria | Proteobacteria | |
| MMDBm0002553 | Spirosoma linguale | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0794428 | Streptococcus intermedius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794581 | Streptococcus mitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794617 | Streptococcus mutans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002610 | Streptococcus pneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001976 | Tropheryma whipplei | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0793485 | Weissella paramesenteroides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000246 | Prevotella intermedia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000763 | Prevotella bryantii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0001035 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001040 | Bifidobacterium breve | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0392190 | Bacteroides graminisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393956 | Prevotella enoeca | Eubacteria | Bacteroidetes | Anaerobe |
