| MMDBm0000009 | Adlercreutzia equolifaciens | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0723927 | Atopobium minutum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0730668 | Bacillus atrophaeus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001257 | Bacillus clausii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730439 | Bacillus endophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761185 | Cytobacillus firmus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730452 | Bacillus flexus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000028 | Bacillus halodurans | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730482 | Bacillus infantis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001255 | Bacillus licheniformis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001269 | Bacillus megaterium | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730692 | Bacillus mojavensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730533 | Bacillus nealsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730698 | Bacillus sonorensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730891 | Bacillus thermoamylovorans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000033 | Bacillus vallismortis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0395112 | Phocaeicola dorei | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392291 | Bacteroides sp. 3_1_33FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392292 | Bacteroides sp. 3_1_40A | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392301 | Bacteroides sp. 4_3_47FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392307 | Bacteroides sp. 9_1_42FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000057 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0766910 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0766911 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000097 | Brevibacillus brevis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0808543 | Bulleidia extructa | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0483496 | Burkholderia cepacia | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0399987 | Capnocytophaga granulosa | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0399995 | Capnocytophaga sputigena | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0000882 | Cetobacterium somerae | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0000114 | acetobutylicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798609 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802992 | Lacrimispora indolis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802894 | Clostridium methoxybenzovorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798898 | Clostridium paraputrificum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798939 | Clostridium sartagoforme | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0799100 | Clostridium sp. 7_2_43FAA | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798974 | Clostridium tyrobutyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001503 | Cryptobacterium curtum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0667921 | Curtobacterium flaccumfaciens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000148 | Dysgonomonas gadei | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0000150 | Eggerthella lenta | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0724384 | Eggerthella sp. 1_3_56FAA | Eubacteria | Actinobacteria | Nanaerobe |
| MMDBm0000151 | Eggerthella sp. YY7918 | Eubacteria | Actinobacteria | Nanaerobe |
| MMDBm0787536 | Enterococcus phoeniculicola | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002188 | Filifactor alocis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0416194 | Fusobacterium mortiferum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0001132 | Gordonibacter pamelaeae | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0544444 | Klebsiella michiganensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0792760 | Limosilactobacillus fermentum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001747 | Limosilactobacillus fermentum | Eubacteria | Firmicutes | Facultative anaerobe; microaerophile |
| MMDBm0790564 | Lactobacillus jensenii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002216 | Lactococcus garvieae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001766 | Laribacter hongkongensis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0763254 | Lysinibacillus fusiformis | Eubacteria | Firmicutes | |
| MMDBm0001794 | Lysinibacillus sphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0670563 | Microbacterium oleivorans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0670570 | Microbacterium paraoxydans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000002 | Micromonospora aurantiaca | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001876 | Mobiluncus curtisii | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0657325 | Mycolicibacterium fortuitum | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0002052 | Mycoplasma hominis | Eubacteria | Tenericutes | Anaerobe |
| MMDBm0764325 | Oceanobacillus picturae | Eubacteria | Firmicutes | |
| MMDBm0000222 | Ochrobactrum intermedium | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0810484 | Peptoniphilus lacrimalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000241 | Porphyromonas asaccharolytica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000242 | Porphyromonas endodontalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0002369 | Porphyromonas gingivalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393499 | Porphyromonas somerae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0692558 | Acidipropionibacterium jensenii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0580104 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580229 | Pseudomonas nitroreducens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0547370 | Raoultella planticola | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0461764 | Roseomonas mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001136 | Ruminococcaceae bacterium D16 | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0639412 | Schlesneria paludicola | Eubacteria | Planctomycetes | Facultative anaerobe |
| MMDBm0559624 | Chania multitudinisentens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0560531 | Serratia liquefaciens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0724468 | Slackia exigua | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0724473 | Slackia piriformis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0796207 | Streptococcus thoraltensis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0557387 | Tatumella ptyseos | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562388 | Yersinia bercovieri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562438 | Yersinia frederiksenii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562450 | Yersinia kristensenii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0562754 | Yersinia rohdei | Eubacteria | Proteobacteria | Obligate anaerobe |
| MMDBm0000409 | Capnocytophaga ochracea | Eubacteria | Bacteroidetes | Aerobe; anaerobe |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001123 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0670509 | Microbacterium gubbeenense | Eubacteria | Actinobacteria | Facultative anaerobe |