| MMDBm0000003 | Acidaminococcus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001191 | Actinobacillus pleuropneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0646414 | Schaalia cardiffensis | Eubacteria | Actinobacteria | Obligate anaerobe |
| MMDBm0645903 | Actinomyces naeslundii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0645907 | Actinomyces oris | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0645922 | Actinomyces urogenitalis | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0785760 | Aerococcus viridans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0516511 | Aeromonas caviae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001198 | Aeromonas hydrophila | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0000010 | Aeromonas jandaei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0516564 | Aeromonas media | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001199 | Aeromonas veronii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000011 | Aggregatibacter aphrophilus | Eubacteria | Proteobacteria | Facultative |
| MMDBm0000012 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000018 | Alistipes finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394800 | Alistipes indistinctus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394805 | Alistipes onderdonkii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000019 | Alistipes shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393872 | Alloprevotella tannerae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000020 | Anaerococcus prevotii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810309 | Anaerococcus vaginalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0766846 | Aneurinibacillus aneurinilyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001232 | Arcanobacterium haemolyticum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0676734 | Arthrobacter castelli | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0723927 | Atopobium minutum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001243 | Atopobium parvulum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0723989 | Lancefieldella rimae | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000024 | Bacillus altitudinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001274 | amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000025 | Bacillus amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730668 | Bacillus atrophaeus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001257 | Bacillus clausii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730439 | Bacillus endophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761185 | Cytobacillus firmus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730452 | Bacillus flexus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730456 | Bacillus fordii | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000028 | Bacillus halodurans | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730482 | Bacillus infantis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001255 | Bacillus licheniformis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001269 | Bacillus megaterium | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730692 | Bacillus mojavensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730533 | Bacillus nealsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730563 | Bacillus pumilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730698 | Bacillus sonorensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730891 | Bacillus thermoamylovorans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730186 | Bacillus thuringiensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000032 | Bacillus timonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000033 | Bacillus vallismortis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000039 | Bacteroides clarus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392098 | Bacteroides faecis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392101 | Bacteroides fluxus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395113 | Phocaeicola massiliensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392206 | Bacteroides oleiciplenus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392215 | Bacteroides pyogenes | Eubacteria | Bacteroidetes | Obligate anaerobe |
| MMDBm0392224 | Bacteroides salyersiae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392237 | Bacteroides timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0662671 | Candidatus Blastococcus massiliensis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000094 | Blautia obeum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802311 | Blautia wexlerae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0665201 | Brachybacterium paraconglomeratum | Eubacteria | Actinobacteria | Aerobe, microaerophile |
| MMDBm0766910 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0766911 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000096 | Brevibacillus borstelensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000097 | Brevibacillus brevis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0663577 | Brevibacterium casei | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0663594 | Brevibacterium linens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0663608 | Brevibacterium ravenspurgense | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0766462 | Brochothrix thermosphacta | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0808543 | Bulleidia extructa | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0393350 | Butyricimonas synergistica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393353 | Butyricimonas virosa | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0399987 | Capnocytophaga granulosa | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0399995 | Capnocytophaga sputigena | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0533363 | Cedecea davisae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001417 | Clostridium lentocellum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0685945 | Cellulosimicrobium cellulans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000882 | Cetobacterium somerae | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0533412 | Citrobacter amalonaticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000105 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533435 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000107 | Cloacibacillus evryensis | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0000114 | acetobutylicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000116 | beijerinckii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805019 | Paraclostridium bifermentans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000120 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001459 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001460 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000121 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798609 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000122 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798785 | Clostridium cadaveris | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798796 | Clostridium celatum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802145 | Ruminiclostridium cellobioparum | Eubacteria | Firmicutes | |
| MMDBm0802708 | Enterocloster citroniae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802089 | Hungateiclostridium clariflavum | Eubacteria | Firmicutes | |
| MMDBm0000125 | Enterocloster clostridioformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805202 | Terrisporobacter glycolicus | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0801127 | Hungatella hathewayi | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0801128 | Hungatella hathewayi | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0802992 | Lacrimispora indolis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808650 | Clostridium innocuum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802894 | Clostridium methoxybenzovorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798898 | Clostridium paraputrificum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808655 | Clostridium saccharogumia | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798939 | Clostridium sartagoforme | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805008 | Paeniclostridium sordellii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0806093 | Clostridium sporosphaeroides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001473 | Clostridium sticklandii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802901 | Clostridium symbiosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798974 | Clostridium tyrobutyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806095 | Clostridium viride | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0724111 | Collinsella tanakaei | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000143 | Coprococcus catus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0648904 | Corynebacterium amycolatum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001489 | Corynebacterium aurimucosum | Eubacteria | Actinobacteria | Facultative aerobe |
| MMDBm0001490 | Corynebacterium kroppenstedtii5 | Eubacteria | Actinobacteria | Facultative aerobe |
| MMDBm0002160 | Corynebacterium ulcerans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001501 | Cronobacter sakazakii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0667921 | Curtobacterium flaccumfaciens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0665710 | Dermacoccus nishinomiyaensis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0809578 | Dialister invisus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809587 | Dialister succinatiphilus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0649955 | Dietzia cinnamea | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000147 | Dorea formicigenerans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000148 | Dysgonomonas gadei | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0808643 | Eggerthia catenaformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000194 | Klebsiella aerogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001574 | Enterobacter asburiae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534735 | Enterobacter cloacae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534800 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534801 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0786738 | Enterococcus asini | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786739 | Enterococcus avium | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786742 | Enterococcus caccae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786748 | Enterococcus casseliflavus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786754 | Enterococcus cecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786759 | Enterococcus dispar | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786760 | Enterococcus durans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787501 | Enterococcus gallinarum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000157 | Enterococcus hirae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787536 | Enterococcus phoeniculicola | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000688 | Enterococcus saccharolyticus | Eubacteria | Firmicutes | |
| MMDBm0540120 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0540122 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001596 | Escherichia fergusonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0533123 | Atlantibacter hermannii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0806711 | Eubacterium brachy | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0801642 | Eubacterium cellulosolvens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805392 | Agathobaculum desmolans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806718 | Eubacterium saphenum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806720 | Eubacterium sulci | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0784143 | Exiguobacterium aurantiacum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0805488 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805490 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000181 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002188 | Filifactor alocis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001614 | Finegoldia magna | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805538 | Flavonifractor plautii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0784087 | Gemella haemolysans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0784091 | Gemella morbillorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000187 | Gemella sanguinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0784094 | Gemella sanguinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0761343 | Geobacillus stearothermophilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761370 | Geobacillus vulcani | Eubacteria | Firmicutes | Aerobe |
| MMDBm0650438 | Gordonia rubripertincta | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650453 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650454 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0786510 | Granulicatella adiacens | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786514 | Granulicatella elegans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0609478 | Grimontia hollisae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0570882 | Haemophilus haemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002186 | Haemophilus influenzae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000190 | Haemophilus parainfluenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0570936 | Haemophilus sputorum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0557502 | Hafnia alvei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544527 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0881919 | Halococcus morrhuae | Not Available | Euryarchaeota | Aerobe |
| MMDBm0810781 | Kallipyga massiliensis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808774 | Kandleria vitulina | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0503626 | Kingella oralis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544444 | Klebsiella michiganensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0682673 | Kocuria palustris | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001729 | Kocuria rhizophila | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001732 | Kytococcus sedentarius | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0802953 | Lachnospira multipara | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0790564 | Lactobacillus jensenii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002216 | Lactococcus garvieae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001762 | Lactococcus lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0793769 | Lactococcus raffinolactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001779 | Leptotrichia buccalis | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0793164 | Leuconostoc lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0793152 | Leuconostoc gelidum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0793161 | Leuconostoc lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0763254 | Lysinibacillus fusiformis | Eubacteria | Firmicutes | |
| MMDBm0001794 | Lysinibacillus sphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0809098 | Megamonas funiformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0435884 | Methylobacterium mesophilicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001859 | Methylobacterium populi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001858 | Methylobacterium radiotolerans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0505748 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0670563 | Microbacterium oleivorans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0670570 | Microbacterium paraoxydans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001872 | Micrococcus luteus | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000002 | Micromonospora aurantiaca | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0809111 | Mitsuokella jalaludinii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0557847 | Morganella morganii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0651046 | Mycobacterium avium | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0657325 | Mycolicibacterium fortuitum | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0564358 | Nevskia ramosa | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0764325 | Oceanobacillus picturae | Eubacteria | Firmicutes | |
| MMDBm0393374 | Odoribacter laneus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0723994 | Olsenella profusa | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0002330 | Olsenella uli | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0803068 | Oribacterium sinus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000226 | Paenibacillus alvei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000227 | Paenibacillus barengoltzii | Eubacteria | Firmicutes | |
| MMDBm0000228 | Paenibacillus daejeonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0767930 | Paenibacillus graminis | Eubacteria | Firmicutes | |
| MMDBm0767965 | Paenibacillus lactis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0555709 | Pantoea agglomerans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000233 | Parabacteroides goldsteinii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394966 | Parabacteroides gordonii | Eubacteria | Bacteroidetes | |
| MMDBm0453897 | Paracoccus yeei | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0393900 | Paraprevotella clara | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393901 | Paraprevotella xylaniphila | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0810478 | Peptoniphilus harei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810479 | Peptoniphilus indolicus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810484 | Peptoniphilus lacrimalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810498 | Peptoniphilus timonensis | Eubacteria | Firmicutes | |
| MMDBm0805078 | Peptostreptococcus stomatis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0563066 | Plesiomonas shigelloides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000241 | Porphyromonas asaccharolytica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000242 | Porphyromonas endodontalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393499 | Porphyromonas somerae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393500 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393926 | Prevotella bivia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393929 | Prevotella brevis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393932 | Prevotella bryantii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393945 | Prevotella corporis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393952 | Prevotella denticola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000245 | Prevotella denticola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393954 | Prevotella disiens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393955 | Prevotella disiens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000247 | Prevotella intermedia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393977 | Prevotella loescheii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000248 | Prevotella melaninogenica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393995 | Prevotella nanceiensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393997 | Prevotella nigrescens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394000 | Prevotella oralis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394012 | Prevotella pallens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000249 | Prevotella ruminicola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394035 | Prevotella shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394039 | Prevotella timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394040 | Prevotella timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394042 | Prevotella veroralis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0692554 | Acidipropionibacterium acidipropionici | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0002383 | Propionibacterium acnes | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0692716 | Cutibacterium avidum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0692558 | Acidipropionibacterium jensenii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0692584 | Pseudopropionibacterium propionicum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0558116 | Proteus mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558122 | Proteus penneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0803106 | Pseudobutyrivibrio ruminis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0580236 | Pseudomonas oleovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0645329 | Pyramidobacter piscolens | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0547370 | Raoultella planticola | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0658861 | Rhodococcus rhodochrous | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0461764 | Roseomonas mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002484 | Ruminococcus albus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001105 | Ruminococcus callidus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805711 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805712 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805717 | Ruminococcus gauvreauii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809204 | Selenomonas ruminantium | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0559624 | Chania multitudinisentens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0560531 | Serratia liquefaciens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0560533 | Serratia marcescens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002232 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0808830 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808831 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0471855 | Sphingomonas paucimobilis | Eubacteria | Proteobacteria | |
| MMDBm0774772 | Staphylococcus arlettae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002566 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000633 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779391 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779389 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779406 | Staphylococcus cohnii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002562 | Staphylococcus epidermidis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779527 | Staphylococcus equorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002563 | Staphylococcus haemolyticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779540 | Staphylococcus hominis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779545 | Staphylococcus intermedius | Eubacteria | Firmicutes | |
| MMDBm0002575 | Staphylococcus lugdunensis | Eubacteria | Firmicutes | Aerobe; anaerobe |
| MMDBm0779566 | Staphylococcus pasteuri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002564 | Staphylococcus saprophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0774625 | Mammaliicoccus sciuri | Eubacteria | Firmicutes | |
| MMDBm0779587 | Staphylococcus simulans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0774633 | Mammaliicoccus vitulinus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779599 | Staphylococcus warneri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779602 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779603 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000269 | Candidatus Stoquefichus massiliensis | Eubacteria | Firmicutes | |
| MMDBm0002597 | Streptococcus agalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794438 | Streptococcus australis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794415 | Streptococcus constellatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794420 | Streptococcus constellatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794454 | Streptococcus cristatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794469 | Streptococcus dysgalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002607 | Streptococcus gordonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794539 | Streptococcus infantis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794428 | Streptococcus intermedius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794581 | Streptococcus mitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794617 | Streptococcus mutans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002630 | Streptococcus oralis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794800 | Streptococcus parasanguinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002632 | Streptococcus parauberis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794814 | Streptococcus peroris | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002610 | Streptococcus pneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002633 | Streptococcus pseudopneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002598 | Streptococcus pyogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000277 | Streptococcus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002603 | Streptococcus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0796207 | Streptococcus thoraltensis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002614 | Streptococcus uberis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0796228 | Streptococcus vestibularis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0395050 | Tannerella forsythia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0557387 | Tatumella ptyseos | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0552405 | Trabulsiella guamensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0646445 | Trueperella pyogenes | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0815377 | Ureaplasma parvum | Eubacteria | Tenericutes | Facultative anaerobe |
| MMDBm0815403 | Ureaplasma urealyticum | Eubacteria | Tenericutes | Facultative anaerobe |
| MMDBm0774233 | Ureibacillus thermosphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0809729 | Veillonella atypica | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809739 | Veillonella dispar | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809759 | Veillonella seminalis | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0610806 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610808 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610810 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002190 | Vibrio furnissii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000288 | Vibrio mimicus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002741 | Vibrio parahaemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562388 | Yersinia bercovieri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562438 | Yersinia frederiksenii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562450 | Yersinia kristensenii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002785 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562754 | Yersinia rohdei | Eubacteria | Proteobacteria | Obligate anaerobe |
| MMDBm0552432 | Yokenella regensburgei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000246 | Prevotella intermedia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000409 | Capnocytophaga ochracea | Eubacteria | Bacteroidetes | Aerobe; anaerobe |
| MMDBm0000464 | Bacillus mycoides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000513 | Actinomyces viscosus | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000763 | Prevotella bryantii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0000923 | Bacteroides nordii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001123 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392190 | Bacteroides graminisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393911 | Prevotella albensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393941 | Prevotella conceptionensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393956 | Prevotella enoeca | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0546994 | Kluyvera ascorbata | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0646416 | Schaalia georgiae | Eubacteria | Actinobacteria | |
| MMDBm0670509 | Microbacterium gubbeenense | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0692719 | Cutibacterium granulosum | Eubacteria | Actinobacteria | |
| MMDBm0772876 | Kurthia massiliensis | Eubacteria | Firmicutes | Aerobe |
