| MMDBm0001963 | Thermotoga maritima MSB8 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002723 | Treponema pallidum subsp. pallidum str. Nichols | Bacteria | Spirochaetes | Human | Not Available | RHEA |
| MMDBm0001295 | Borrelia burgdorferi B31 | Bacteria | Spirochaetes | Human | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098571 | Saccharomyces cerevisiae YJM789 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0098376 | Saccharomyces cerevisiae RM11-1a | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0097178 | Cyberlindnera jadinii | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0098142 | Kluyveromyces lactis NRRL Y-1140 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098297 | Saccharomyces cerevisiae AWRI1631 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0639412 | Schlesneria paludicola DSM 18645 | Bacteria | Planctomycetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809098 | Megamonas funiformis YIT 11815 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000216 | Megamonas hypermegale ART12/1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809729 | Veillonella atypica ACS-049-V-Sch6 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809739 | Veillonella dispar ATCC 17748 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000287 | Veillonella parvula DSM 2008 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0809759 | Veillonella seminalis ACS-216-V-Col6b | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001673 | Haloferax volcanii DS2 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0533363 | Cedecea davisae DSM 4568 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0544444 | Klebsiella michiganensis KCTC 1686 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0610810 | Vibrio fluvialis PG41 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002782 | Yersinia pestis Pestoides F | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0558544 | Providencia rettgeri DSM 1131 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001594 | Escherichia coli O127:H6 str. E2348/69 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
