MiMeDB: Pseudomonas sp. (MMDBm0581042)

Microbe Identification

Microbe name

Pseudomonas sp.

NCBI Taxonomy ID

306

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Species

sp.

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Not Available

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen preference

Not Available

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Unknown		29178920
Human	Nasal cavity			BacDive	34718743
Human	Lower respiratory tract			BacDive	34718743
Human	Large intestine			BacDive	34718743
Human	Tongue			BacDive	34718743
Human	Lower respiratory tract			BacDive	34718743
Human	Pharynx			BacDive	34718743
Human	Bronchi			BacDive	34718743

Health Effects

Host	Related Health Condition	Data Source
Human	Cystic fibrosis	BacDive
Human	Cystic fibrosis	BacDive
Human	Cystic fibrosis	BacDive

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012929	L-Phenylalanine	2-Phenylacetamide	Phenylalanine 2-monooxygenase precursor	Oxygenation	RHEA	34755880
MMDBr0013061	Water	butanoic acid	Oxidized polyvinyl alcohol hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0013116	(3S)-3-hydroxy-L-aspartic acid	Ammonium	L-threo-3-hydroxyaspartate ammonia-lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013136	Hydrogen Ion	Carbon dioxide	Bifunctional aspartate aminotransferase and L-aspartate beta-decarboxylase	Amine group addition	RHEA	34755880
MMDBr0013318	2-Aminomuconic acid semialdehyde	2-Aminomuconic acid	2-aminomuconic 6-semialdehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013634	trans-Aconitic acid	cis-Aconitic acid	Aconitate isomerase	Isomerization	RHEA	34755880
MMDBr0014059	2-Aminomuconic acid	(3E)-2-oxohex-3-enedioate	2-aminomuconate deaminase	Deamination	RHEA	34755880
MMDBr0014065	Adenosine triphosphate	ADP	Glutamate--isopropylamine ligase	Ligation	RHEA	34755880
MMDBr0014146	alpha-Ketoglutarate	L-Glutamic acid	Probable aspartate/prephenate aminotransferase	Amine group addition	RHEA	34755880
MMDBr0014220	(S)-4-hydroxy-2-oxopentanoic acid	(2Z)-2-hydroxypenta-2,4-dienoate	2-oxopent-4-enoate hydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0014227	(S)-4-hydroxy-2-oxopentanoic acid	Acetaldehyde	4-hydroxy-2-oxovalerate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0014313	Acetaldehyde	Acetyl-CoA	Acetaldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014433	(3E)-2-oxohex-3-enedioate	2-oxopent-4-enoic acid	4-oxalocrotonate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0014635	2-Aminophenol	2-Aminomuconic acid semialdehyde	2-aminophenol 1,6-dioxygenase subunit beta	Oxygenation	RHEA	34755880
MMDBr0014655	(R)-piperazine-2-carboxamide	(R)-piperazine-2-carboxylic acid	(R)-stereoselective amidase	Amide hydrolysis	RHEA	34755880
MMDBr0014656	beta-alaninamide	beta-Alanine	(R)-stereoselective amidase	Amide hydrolysis	RHEA	34755880
MMDBr0015074	FADH2	(2S)-2-phenyloxirane	Styrene monooxygenase StyA	Oxygenation	RHEA	34755880
MMDBr0015166	Iron(3+)	17-hydroxylupanine	Lupanine 17-hydroxylase [cytochrome c]	Hydroxylation	RHEA	34755880
MMDBr0015281	Water	4-Oxo-1-(3-pyridyl)-1-butanone	Pseudooxynicotine oxidase	Oxidation	RHEA	34755880
MMDBr0015318	2-Hydroxy-6-ketononadienedicarboxylate	(2Z)-2-hydroxypenta-2,4-dienoate	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0015319	delta7-Avenasterol	(2Z)-2-hydroxypenta-2,4-dienoate	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0015321	4-Oxo-1-(3-pyridyl)-1-butanone	4-oxo-4-(pyridin-3-yl)butanoic acid	3-succinoylsemialdehyde-pyridine dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0016149	N-(gamma-L-glutamyl)-L-alaninol zwitterion	L-alaninol	Gamma-glutamyl-L-1-hydroxyisopropylamide hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0016883	Water	Malonic semialdehyde	Probable nitronate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016982	2,4-Diacetylphloroglucinol	2-acetylphloroglucinol	2,4-diacetylphloroglucinol hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0024361	NAD	Hydrogen Ion	Alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024363	NAD	Hydrogen Ion	NAD-dependent alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024526	Water	Hydrogen Ion	Aldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024625	NAD	Hydrogen Ion	L-carnitine dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024631	NAD	Hydrogen Ion	D-threo-aldose 1-dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024651	Iron(3+)	Hydrogen Ion	Polyvinylalcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024731	Oxygen	Water	Alkanesulfonate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024935	NAD	Hydrogen Ion	3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase	Reduction	RHEA	34755880
MMDBr0024936	NADP(+)	Hydrogen Ion	3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase	Reduction	RHEA	34755880

Genome Data

Genome Link

Not Available

Genome Length

Not Available

# Predicted Proteins

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

Reference

PMID: 17704766

Source Links

GenBank