Methylation

Reaction Identification
Reaction IDMMDBr0025100
Reaction typeMethylation
Sub-SystemNot Available
In non-microbes0
In microbes163
Data SourcesRHEA;
Metabolism
PrecursorReactionProduct
S-Adenosylmethionine

23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

Methylation

S-Adenosylhomocysteine
Microbe IDOrganismKindgomPhylumOxygen preference
MMDBm0001337Burkholderia cenocepaciaEubacteriaProteobacteriaFacultative aerobe
MMDBm0001198Aeromonas hydrophilaEubacteriaProteobacteriaFacultative aerobe
MMDBm0002514Shewanella sp. ANA-3EubacteriaProteobacteriaFacultative
MMDBm0001622Francisella tularensisEubacteriaProteobacteriaAerobe
MMDBm0001587Escherichia coliEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002781Yersinia enterocoliticaEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001244Azoarcus sp. BH72EubacteriaProteobacteriaMicroaerophilic
MMDBm0002516Shewanella sp. W3-18-1EubacteriaProteobacteriaFacultative
MMDBm0002515Shewanella amazonensisEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002418Psychromonas ingrahamiiEubacteriaProteobacteriaAnaerobe
MMDBm0001178Acidovorax citrulliEubacteriaProteobacteriaAerobe
MMDBm0001801Marinobacter nauticusEubacteriaProteobacteriaFacultative
MMDBm0002366Polaromonas naphthalenivoransEubacteriaProteobacteriaAerobe
MMDBm0001179Acidovorax sp. JS42EubacteriaProteobacteriaAerobe
MMDBm0002737Verminephrobacter eiseniaeEubacteriaProteobacteria
MMDBm0002517Shewanella balticaEubacteriaProteobacteriaAerobe; anaerobe
MMDBm0001197Aeromonas salmonicidaEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001571Enterobacter sp. 638EubacteriaProteobacteriaFacultative anaerobe
MMDBm0002519Shewanella putrefaciensEubacteriaProteobacteriaFacultative
MMDBm0001995Candidatus Vesicomyosocius okutaniiEubacteriaProteobacteriaAnaerobe
MMDBm0001558Dichelobacter nodosusEubacteriaProteobacteriaAnaerobe
MMDBm0002743Vibrio choleraeEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001772Legionella pneumophilaEubacteriaProteobacteriaAerobe
MMDBm0001727Klebsiella pneumoniaeEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001802Marinomonas sp. MWYL1EubacteriaProteobacteriaAerobe
MMDBm0002520Shewanella balticaEubacteriaProteobacteriaAerobe; anaerobe
MMDBm0001501Cronobacter sakazakiiEubacteriaProteobacteriaAnaerobe
MMDBm0610847Vibrio campbelliiEubacteriaProteobacteria
MMDBm0001450Citrobacter koseriEubacteriaProteobacteriaFacultatively anaerobe
MMDBm0002521Shewanella sediminisEubacteriaProteobacteriaFacultative
MMDBm0002522Shewanella pealeanaEubacteriaProteobacteriaFacultative
MMDBm0002523Shewanella balticaEubacteriaProteobacteriaAerobe; anaerobe
MMDBm0002524Shewanella halifaxensisEubacteriaProteobacteriaFacultative
MMDBm0001186Acinetobacter baumanniiEubacteriaProteobacteriaAerobe
MMDBm0001185Acinetobacter baumanniiEubacteriaProteobacteriaAerobe
MMDBm0002525Shewanella woodyiEubacteriaProteobacteriaFacultative
MMDBm0002368Polynucleobacter necessariusEubacteriaProteobacteriaAerobe
MMDBm0002580Stenotrophomonas maltophiliaEubacteriaProteobacteriaAerobe
MMDBm0001187Acinetobacter baumanniiEubacteriaProteobacteriaAerobe
MMDBm0002430Ralstonia pickettiiEubacteriaProteobacteriaAerobe
MMDBm0001576tasmaniensisEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001418Cellvibrio japonicusEubacteriaProteobacteriaAerobe
MMDBm0002387Proteus mirabilisEubacteriaProteobacteriaAerobe
MMDBm0002581Stenotrophomonas maltophiliaEubacteriaProteobacteriaAerobe
MMDBm0002005Acidithiobacillus ferrooxidansEubacteriaProteobacteriaAerobe
MMDBm0001210Vibrio fischeriEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001728Klebsiella pneumoniaeEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001211Aliivibrio salmonicidaEubacteriaProteobacteriaFacultative
MMDBm0001189Acinetobacter baumanniiEubacteriaProteobacteriaAerobe
MMDBm0001188Acinetobacter baumanniiEubacteriaProteobacteriaAerobe
MMDBm0001172Acidithiobacillus ferrooxidansEubacteriaProteobacteriaFacultative
MMDBm0002745Vibrio splendidusEubacteriaProteobacteriaFacultative
MMDBm0002526Shewanella piezotoleransEubacteriaProteobacteriaFacultative
MMDBm0002527Shewanella balticaEubacteriaProteobacteriaAerobe; anaerobe
MMDBm0002746Vibrio choleraeEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002722Tolumonas auensisEubacteriaProteobacteriaFacultative
MMDBm0001565Edwardsiella ictaluriEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002347Pectobacterium carotovorumEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001611balearicaEubacteriaProteobacteriaFacultative
MMDBm0001676Halomonas elongataEubacteriaProteobacteriaAerobe
MMDBm0000190Haemophilus parainfluenzaeEubacteriaProteobacteriaAerobe; facultative anaerobe
MMDBm0001935lactamicaEubacteriaProteobacteriaAerobic
MMDBm0002004Alteromonas mediterraneaEubacteriaProteobacteriaAerobe
MMDBm0001803mediterraneaEubacteriaProteobacteriaAerobic
MMDBm0001216SN2EubacteriaProteobacteria
MMDBm0001804posidonicaEubacteriaProteobacteriaAerobic
MMDBm0001248Bacillus subtilisEubacteriaFirmicutesFacultative aerobe
MMDBm0001658Haemophilus influenzaeEubacteriaProteobacteriaAerobe; facultative anaerobe
MMDBm0541555Escherichia coliEubacteriaProteobacteriaFacultative anaerobe
MMDBm0609496Photobacterium angustumEubacteriaProteobacteria
MMDBm0002399Pseudomonas aeruginosaEubacteriaProteobacteriaAerobe
MMDBm0002513Shewanella frigidimarinaEubacteriaProteobacteriaFacultative
MMDBm0001212Alkalilimnicola ehrlichiiEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001336Burkholderia ambifariaEubacteriaProteobacteriaFacultative aerobe
MMDBm0001621Francisella tularensisEubacteriaProteobacteriaAerobe
MMDBm0002512Shewanella sp. MR-4EubacteriaProteobacteriaFacultative
MMDBm0002511Shewanella sp. MR-7EubacteriaProteobacteriaFacultative
MMDBm0001705Haemophilus somnusEubacteriaProteobacteriaAerobe; facultative anaerobe
MMDBm0001504Ralstonia eutrophaEubacteriaProteobacteriaFacultative aerobe
MMDBm0002534Shigella flexneriEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001586Escherichia coliEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001205Alcanivorax borkumensisEubacteriaProteobacteriaAerobe
MMDBm0002365Polaromonas sp. JS666EubacteriaProteobacteriaAerobe
MMDBm0002510Shewanella denitrificansEubacteriaProteobacteriaFacultative
MMDBm0001334Burkholderia xenovoransEubacteriaProteobacteriaAerobe
MMDBm0001620Francisella tularensisEubacteriaProteobacteriaAerobe
MMDBm0001335Burkholderia cenocepaciaEubacteriaProteobacteriaFacultative aerobe
MMDBm0001855Methylobacillus flagellatusEubacteriaProteobacteriaAerobe
MMDBm0002398Pseudomonas entomophilaEubacteriaProteobacteriaAerobe
MMDBm0001506Cupriavidus metalliduransEubacteriaProteobacteriaFacultative
MMDBm0002416Psychrobacter cryohalolentisEubacteriaProteobacteriaAerobe
MMDBm0001449Chromohalobacter salexigensEubacteriaProteobacteriaAerobe
MMDBm0000169Escherichia coliEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001204Rhodoferax ferrireducensEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001619Francisella tularensisEubacteriaProteobacteriaAerobe
MMDBm0001294aviumEubacteriaProteobacteriaAerobe
MMDBm0002765Xanthomonas oryzaeEubacteriaProteobacteriaAerobe
MMDBm0001665Hahella chejuensisEubacteriaProteobacteriaAerobe
MMDBm0001333Burkholderia thailandensisEubacteriaProteobacteriaAerobe
MMDBm0001949Nitrosospira multiformisEubacteriaProteobacteriaAerobe
MMDBm0002720Thiomicrospira crunogena EubacteriaProteobacteriaMicroaerophilic
MMDBm0002533Shigella boydiiEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002532Shigella dysenteriaeEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001332Burkholderia sp. 383EubacteriaProteobacteriaFacultative aerobe
MMDBm0002764Xanthomonas campestrisEubacteriaProteobacteriaAerobe
MMDBm0002388Pseudoalteromonas haloplanktisEubacteriaProteobacteriaAerobe
MMDBm0001942Nitrosococcus oceaniEubacteriaProteobacteriaAerobe
MMDBm0001331Burkholderia pseudomalleiEubacteriaProteobacteriaAerobe
MMDBm0002397Pseudomonas fluorescensEubacteriaProteobacteriaAerobe
MMDBm0002719Thiobacillus denitrificansEubacteriaProteobacteriaAerobe
MMDBm0002531Shigella sonneiEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001505Ralstonia eutrophaEubacteriaProteobacteriaFacultative aerobe
MMDBm0001517Dechloromonas aromaticaEubacteriaProteobacteriaFacultative
MMDBm0001479psychrerythraeaEubacteriaProteobacteriaFacultatively anaerobe
MMDBm0002395Pseudomonas syringaeEubacteriaProteobacteriaAerobe
MMDBm0002415Psychrobacter arcticusEubacteriaProteobacteriaAerobe
MMDBm0002393Pseudomonas fluorescensEubacteriaProteobacteriaAerobe
MMDBm0001659Haemophilus influenzaeEubacteriaProteobacteriaAerobe; facultative anaerobe
MMDBm0002763Xanthomonas campestrisEubacteriaProteobacteriaAerobe
MMDBm0002396Pseudomonas syringaeEubacteriaProteobacteriaAerobe
MMDBm0548594Salmonella entericaEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001209Vibrio fischeriEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002762Xanthomonas oryzaeEubacteriaProteobacteriaAerobe
MMDBm0001618Francisella tularensisEubacteriaProteobacteriaAerobe
MMDBm0001236Aromatoleum aromaticumEubacteriaProteobacteriaFacultative
MMDBm0550379Salmonella entericaEubacteriaProteobacteriaFacultative anaerobe
MMDBm0001713Idiomarina loihiensisEubacteriaProteobacteriaAerobe
MMDBm0001771Legionella pneumophilaEubacteriaProteobacteriaAerobe
MMDBm0001770Legionella pneumophilaEubacteriaProteobacteriaAerobe
MMDBm0001769Legionella pneumophilaEubacteriaProteobacteriaAerobe
MMDBm0001865Methylococcus capsulatusEubacteriaProteobacteriaAerobe
MMDBm0001329Burkholderia malleiEubacteriaProteobacteriaAerobe
MMDBm0001330Burkholderia pseudomalleiEubacteriaProteobacteriaAerobe
MMDBm0001284succiniciproducensEubacteriaProteobacteriaAnaerobe
MMDBm0002346Pectobacterium atrosepticumEubacteriaProteobacteriaAnaerobe
MMDBm0001183Acinetobacter sp. ADP1EubacteriaProteobacteriaAerobe
MMDBm0002360Photobacterium profundumEubacteriaProteobacteriaFacultative
MMDBm0002742Vibrio vulnificusEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002361Photorhabdus luminescensEubacteriaProteobacteriaFacultative
MMDBm0001980Chromobacterium violaceumEubacteriaProteobacteriaFacultatively anaerobe
MMDBm0001969Haemophilus ducreyiEubacteriaProteobacteriaAnaerobe
MMDBm0001966Bordetella pertussisEubacteriaProteobacteriaAerobe
MMDBm0001965Bordetella parapertussisEubacteriaProteobacteriaAerobe
MMDBm0001964Bordetella bronchisepticaEubacteriaProteobacteriaAerobe
MMDBm0000368Shigella flexneriEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002772Xylella fastidiosaEubacteriaProteobacteriaAerobe
MMDBm0002741Vibrio parahaemolyticusEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002394Pseudomonas syringaeEubacteriaProteobacteriaAerobe
MMDBm0002392Pseudomonas putidaEubacteriaProteobacteriaAerobe
MMDBm0002740Vibrio vulnificusEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002509Shewanella oneidensisEubacteriaProteobacteriaFacultative
MMDBm0000162Escherichia coliEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002761Xanthomonas campestrisEubacteriaProteobacteriaAerobe
MMDBm0001972Xanthomonas citriEubacteriaProteobacteriaAerobe
MMDBm0542442Escherichia coliEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002429Ralstonia solanacearumEubacteriaProteobacteriaAerobe
MMDBm0550758Salmonella entericaEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002492Salmonella entericaEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002345Pasteurella multocidaEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002391Pseudomonas aeruginosaEubacteriaProteobacteriaAerobe
MMDBm0501883Rubrivivax gelatinosusEubacteriaProteobacteria
MMDBm0002739Vibrio choleraeEubacteriaProteobacteriaFacultative anaerobe
MMDBm0002771Xylella fastidiosaEubacteriaProteobacteriaAerobe