| MMDBm0001166 | Achromobacter xylosoxidans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0480821 | Achromobacter xylosoxidans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0808970 | Acidaminococcus intestini | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001188 | Acinetobacter baumannii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002164 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572812 | Acinetobacter haemolyticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572828 | Acinetobacter johnsonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572837 | Acinetobacter junii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572852 | Acinetobacter lwoffii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000007 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000008 | Acinetobacter radioresistens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001191 | Actinobacillus pleuropneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0646414 | Schaalia cardiffensis | Eubacteria | Actinobacteria | Obligate anaerobe |
| MMDBm0645903 | Actinomyces naeslundii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0646422 | Schaalia odontolytica | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0645907 | Actinomyces oris | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0645922 | Actinomyces urogenitalis | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0785760 | Aerococcus viridans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0422692 | Afipia birgiae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000011 | Aggregatibacter aphrophilus | Eubacteria | Proteobacteria | Facultative |
| MMDBm0000012 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000015 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Anaerobe |
| MMDBm0000016 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0481922 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000018 | Alistipes finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394800 | Alistipes indistinctus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394805 | Alistipes onderdonkii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394807 | Alistipes putredinis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000019 | Alistipes shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0645212 | Acetomicrobium hydrogeniformans | Eubacteria | Synergistetes | |
| MMDBm0766846 | Aneurinibacillus aneurinilyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000023 | Arcobacter butzleri | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0676734 | Arthrobacter castelli | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000024 | Bacillus altitudinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001274 | amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000025 | Bacillus amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730668 | Bacillus atrophaeus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001264 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001257 | Bacillus clausii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730439 | Bacillus endophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761185 | Cytobacillus firmus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730452 | Bacillus flexus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730456 | Bacillus fordii | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000028 | Bacillus halodurans | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730482 | Bacillus infantis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001255 | Bacillus licheniformis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001269 | Bacillus megaterium | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730692 | Bacillus mojavensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730533 | Bacillus nealsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730563 | Bacillus pumilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730698 | Bacillus sonorensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730891 | Bacillus thermoamylovorans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730186 | Bacillus thuringiensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000032 | Bacillus timonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000033 | Bacillus vallismortis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0392079 | Bacteroides caccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000039 | Bacteroides clarus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000046 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000047 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392208 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392248 | Bacteroides xylanisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392211 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392239 | Bacteroides uniformis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0514239 | Campylobacter ureolyticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0648030 | Bifidobacterium boum | Eubacteria | Actinobacteria | Facultative anaerobe, air+co2 |
| MMDBm0648069 | Bifidobacterium coryneforme | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000072 | Bifidobacterium catenulatum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000079 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000087 | Bifidobacterium mongoliense | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000089 | Bifidobacterium pseudolongum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648159 | Bifidobacterium ruminantium | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648166 | Bifidobacterium scardovii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0647984 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648174 | Bifidobacterium thermacidophilum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000090 | Bifidobacterium thermophilum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0662671 | Candidatus Blastococcus massiliensis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000092 | Blautia hansenii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000094 | Blautia obeum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802311 | Blautia wexlerae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0482767 | Bordetella hinzii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0665201 | Brachybacterium paraconglomeratum | Eubacteria | Actinobacteria | Aerobe, microaerophile |
| MMDBm0641709 | Brachyspira pilosicoli | Eubacteria | Spirochaetes | Anaerobe |
| MMDBm0000095 | Bradyrhizobium elkanii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0423522 | Bradyrhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000097 | Brevibacillus brevis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0663577 | Brevibacterium casei | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0663594 | Brevibacterium linens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0663608 | Brevibacterium ravenspurgense | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0417443 | Brevundimonas bacteroides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0417451 | Brevundimonas diminuta | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0766462 | Brochothrix thermosphacta | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0483496 | Burkholderia cepacia | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0798353 | Butyricicoccus pullicaecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0513907 | Campylobacter coli | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001371 | Campylobacter concisus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001370 | Campylobacter curvus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0000100 | Campylobacter fetus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0513982 | Campylobacter gracilis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000101 | Campylobacter hominis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0513988 | Campylobacter hyointestinalis | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0514216 | Campylobacter rectus | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0514218 | Campylobacter showae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001417 | Clostridium lentocellum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0685945 | Cellulosimicrobium cellulans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000107 | Cloacibacillus evryensis | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0000114 | acetobutylicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000116 | beijerinckii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798609 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798796 | Clostridium celatum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802145 | Ruminiclostridium cellobioparum | Eubacteria | Firmicutes | |
| MMDBm0802708 | Enterocloster citroniae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802089 | Hungateiclostridium clariflavum | Eubacteria | Firmicutes | |
| MMDBm0000125 | Enterocloster clostridioformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001470 | Clostridium difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0804868 | Clostridioides difficile | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0804869 | Clostridioides difficile | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000112 | Clostridioides difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0801127 | Hungatella hathewayi | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0801128 | Hungatella hathewayi | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0802992 | Lacrimispora indolis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808650 | Clostridium innocuum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802894 | Clostridium methoxybenzovorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798898 | Clostridium paraputrificum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808655 | Clostridium saccharogumia | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798939 | Clostridium sartagoforme | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806093 | Clostridium sporosphaeroides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001473 | Clostridium sticklandii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802901 | Clostridium symbiosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798974 | Clostridium tyrobutyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806095 | Clostridium viride | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0724111 | Collinsella tanakaei | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001480 | testosteroni | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000143 | Coprococcus catus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0648901 | Corynebacterium ammoniagenes | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0648904 | Corynebacterium amycolatum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001489 | Corynebacterium aurimucosum | Eubacteria | Actinobacteria | Facultative aerobe |
| MMDBm0648978 | Corynebacterium durum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0649002 | Corynebacterium glucuronolyticum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001490 | Corynebacterium kroppenstedtii5 | Eubacteria | Actinobacteria | Facultative aerobe |
| MMDBm0649080 | Corynebacterium propinquum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0649119 | Corynebacterium striatum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0649135 | Corynebacterium tuberculostearicum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0002160 | Corynebacterium ulcerans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0649150 | Corynebacterium ureicelerivorans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0667921 | Curtobacterium flaccumfaciens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001529 | Delftia acidovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0665710 | Dermacoccus nishinomiyaensis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0510057 | Desulfovibrio desulfuricans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0649955 | Dietzia cinnamea | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000147 | Dorea formicigenerans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0397638 | Dyadobacter beijingensis | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0001564 | Dyadobacter fermentans | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0002181 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0503548 | Eikenella corrodens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0786738 | Enterococcus asini | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786739 | Enterococcus avium | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786742 | Enterococcus caccae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786748 | Enterococcus casseliflavus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786754 | Enterococcus cecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786759 | Enterococcus dispar | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787501 | Enterococcus gallinarum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000688 | Enterococcus saccharolyticus | Eubacteria | Firmicutes | |
| MMDBm0801642 | Eubacterium cellulosolvens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805392 | Agathobaculum desmolans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001104 | Anaerobutyricum hallii | Eubacteria | Firmicutes | |
| MMDBm0000172 | Eubacterium limosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0784143 | Exiguobacterium aurantiacum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0805488 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805490 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000181 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002188 | Filifactor alocis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805538 | Flavonifractor plautii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0416260 | Fusobacterium ulcerans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0761343 | Geobacillus stearothermophilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761370 | Geobacillus vulcani | Eubacteria | Firmicutes | Aerobe |
| MMDBm0650438 | Gordonia rubripertincta | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650453 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650454 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0570882 | Haemophilus haemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002186 | Haemophilus influenzae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000190 | Haemophilus parainfluenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0570936 | Haemophilus sputorum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0881919 | Halococcus morrhuae | Not Available | Euryarchaeota | Aerobe |
| MMDBm0808774 | Kandleria vitulina | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0503626 | Kingella oralis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0682673 | Kocuria palustris | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001729 | Kocuria rhizophila | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001732 | Kytococcus sedentarius | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0802953 | Lachnospira multipara | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0792831 | Lactobacillus coryniformis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792742 | Lactobacillus gastricus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792746 | Lactobacillus mucosae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790389 | Lactiplantibacillus pentosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001762 | Lactococcus lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0793769 | Lactococcus raffinolactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001766 | Laribacter hongkongensis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0491302 | Lautropia mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533093 | Leminorella grimontii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001779 | Leptotrichia buccalis | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0793152 | Leuconostoc gelidum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0793161 | Leuconostoc lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766514 | Listeria grayi | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766676 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001784 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766572 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766585 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766588 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766709 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766729 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766731 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766734 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0763254 | Lysinibacillus fusiformis | Eubacteria | Firmicutes | |
| MMDBm0001794 | Lysinibacillus sphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0809098 | Megamonas funiformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002107 | Megasphaera elsdenii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001817 | Methanobrevibacter ruminantium | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0000218 | Methanobrevibacter smithii | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0881917 | Methanomassiliicoccus luminyensis | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0001846 | Methanosphaera stadtmanae | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0435884 | Methylobacterium mesophilicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001859 | Methylobacterium populi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001858 | Methylobacterium radiotolerans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0505748 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0505746 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0670563 | Microbacterium oleivorans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0670570 | Microbacterium paraoxydans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001872 | Micrococcus luteus | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000002 | Micromonospora aurantiaca | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0809111 | Mitsuokella jalaludinii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001876 | Mobiluncus curtisii | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001878 | Moraxella catarrhalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0651046 | Mycobacterium avium | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0657325 | Mycolicibacterium fortuitum | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0503661 | Neisseria cinerea | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0503667 | Neisseria elongata | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0503672 | Neisseria flavescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0503763 | Neisseria macacae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0503982 | Neisseria mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0503999 | Neisseria subflava | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0564358 | Nevskia ramosa | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0764325 | Oceanobacillus picturae | Eubacteria | Firmicutes | |
| MMDBm0000221 | Ochrobactrum anthropi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000222 | Ochrobactrum intermedium | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0723994 | Olsenella profusa | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0500745 | Oxalobacter formigenes | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0500746 | Oxalobacter formigenes | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0000226 | Paenibacillus alvei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000227 | Paenibacillus barengoltzii | Eubacteria | Firmicutes | |
| MMDBm0000228 | Paenibacillus daejeonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0767930 | Paenibacillus graminis | Eubacteria | Firmicutes | |
| MMDBm0767965 | Paenibacillus lactis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0453897 | Paracoccus yeei | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0501221 | Parasutterella excrementihominis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0810484 | Peptoniphilus lacrimalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0393926 | Prevotella bivia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393945 | Prevotella corporis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0692554 | Acidipropionibacterium acidipropionici | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0002383 | Propionibacterium acnes | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0692716 | Cutibacterium avidum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0002385 | freudenreichii | Eubacteria | Actinobacteria | Facultative |
| MMDBm0692558 | Acidipropionibacterium jensenii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0692584 | Pseudopropionibacterium propionicum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0803106 | Pseudobutyrivibrio ruminis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0580104 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580255 | Pseudomonas alcaliphila | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002397 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580585 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580586 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580229 | Pseudomonas nitroreducens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580236 | Pseudomonas oleovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002403 | Pseudomonas putida | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002086 | Pseudomonas stutzeri | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0801900 | Pseudoramibacter alactolyticus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000337 | Ralstonia pickettii | Eubacteria | Proteobacteria | |
| MMDBm0658815 | Rhodococcus hoagii | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002444 | Rhodococcus erythropolis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0658861 | Rhodococcus rhodochrous | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0461764 | Roseomonas mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0685377 | Rothia aeria | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002480 | Rothia dentocariosa | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002479 | Rothia mucilaginosa | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0397948 | Rudanella lutea | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0002484 | Ruminococcus albus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000262 | Ruminococcus bicirculans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001105 | Ruminococcus callidus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805711 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805712 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805717 | Ruminococcus gauvreauii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0639412 | Schlesneria paludicola | Eubacteria | Planctomycetes | Facultative anaerobe |
| MMDBm0809204 | Selenomonas ruminantium | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0626640 | Silanimonas lenta | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0724468 | Slackia exigua | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0002553 | Spirosoma linguale | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0774772 | Staphylococcus arlettae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002566 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000633 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779391 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779389 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779406 | Staphylococcus cohnii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002562 | Staphylococcus epidermidis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779527 | Staphylococcus equorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002563 | Staphylococcus haemolyticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779540 | Staphylococcus hominis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002575 | Staphylococcus lugdunensis | Eubacteria | Firmicutes | Aerobe; anaerobe |
| MMDBm0779566 | Staphylococcus pasteuri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779569 | Staphylococcus pettenkoferi | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002564 | Staphylococcus saprophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0774625 | Mammaliicoccus sciuri | Eubacteria | Firmicutes | |
| MMDBm0774633 | Mammaliicoccus vitulinus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779599 | Staphylococcus warneri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779602 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779603 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0626692 | Stenotrophomonas maltophilia | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0626730 | Stenotrophomonas rhizophila | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0000269 | Candidatus Stoquefichus massiliensis | Eubacteria | Firmicutes | |
| MMDBm0002597 | Streptococcus agalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002252 | Streptococcus gallolyticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002607 | Streptococcus gordonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794553 | Streptococcus lutetiensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794617 | Streptococcus mutans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0808723 | Faecalicoccus pleomorphus | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000277 | Streptococcus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002603 | Streptococcus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0796228 | Streptococcus vestibularis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0646445 | Trueperella pyogenes | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0774233 | Ureibacillus thermosphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0646461 | Varibaculum cambriense | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000287 | Veillonella parvula | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809759 | Veillonella seminalis | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0793461 | Weissella cibaria | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000409 | Capnocytophaga ochracea | Eubacteria | Bacteroidetes | Aerobe; anaerobe |
| MMDBm0000464 | Bacillus mycoides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000513 | Actinomyces viscosus | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001035 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001111 | Actinomyces graevenitzii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0646416 | Schaalia georgiae | Eubacteria | Actinobacteria | |
| MMDBm0658814 | Rhodococcus hoagii | Eubacteria | Actinobacteria | |
| MMDBm0670509 | Microbacterium gubbeenense | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0692719 | Cutibacterium granulosum | Eubacteria | Actinobacteria | |
| MMDBm0772876 | Kurthia massiliensis | Eubacteria | Firmicutes | Aerobe |
