MiMeDB: Biospecimens and Location

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Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0000001	Indoxyl sulfate	C₈H₇NO₄S 213.21	Human Urine Human Blood Human Feces Human Cerebrospinal Fluid (CSF) Human Bone Marrow Human Brain Human Endothelial tissue Human Heart Human Kidney Human Liver Human Skeletal Muscle	0	Co-metabolite	Food, diet (tryptophan-containing foods)
MMDBc0000002	p-Cresol sulfate	C₇H₈O₄S 188.201	Human Blood Human Urine Human Saliva Human Feces Human Cerebrospinal Fluid (CSF) Human Placenta	8	Co-metabolite	Food, diet (phenylalanine-containing foods)
MMDBc0000003	p-Cresol	C₇H₈O 108.1378	Human Urine Human Blood Human Feces Human Saliva Human Adipose Tissue Human Fibroblasts	15	Co-metabolite	Fruit
MMDBc0000004	Indole	C₈H₇N 117.1479	Human Feces Human Urine Human Saliva Human Blood Human Epidermis Human Fibroblasts Human Intestine Human Neuron	784	Co-metabolite	Coffee
MMDBc0000005	2-Ketobutyric acid	C₄H₆O₃ 102.0886	Human Feces Human Urine Human Blood Human Cerebrospinal Fluid (CSF) Human Saliva	1151	Co-metabolite
MMDBc0000006	Biotin	C₁₀H₁₆N₂O₃S 244.311	Human Feces Human Cerebrospinal Fluid (CSF) Human Blood Human Urine Human Saliva Human All Tissues Human Prostate	1425	Co-metabolite	Juice
MMDBc0000007	Carnosine	C₉H₁₄N₄O₃ 226.2325	Human Feces Human Urine Human Blood Human Saliva Human Brain Human Fibroblasts Human Intestine Human Kidney Human Liver Human Neuron Human Placenta Human Skeletal Muscle	820	Co-metabolite	Not Available
MMDBc0000008	Adenine	C₅H₅N₅ 135.1267	Human Feces Human Saliva Human Cerebrospinal Fluid (CSF) Human Blood Human Urine Human All Tissues Human Placenta Human Prostate	1788	Co-metabolite	Not Available
MMDBc0000009	Taurocholic acid	C₂₆H₄₅NO₇S 515.703	Human Feces Human Urine Human Blood Human Bile Human Fibroblasts Human Intestine Human Liver Human Neuron Human Placenta	210	Co-metabolite	Not Available
MMDBc0000010	Butyric acid	C₄H₈O₂ 88.1051	Human Feces Human Urine Human Saliva Human Breath Human Breast Milk Human Blood Human Cerebrospinal Fluid (CSF) Human Fibroblasts Human Intestine Human Kidney Human Neuron Human Prostate Human Skeletal Muscle	778	Co-metabolite	Meat
MMDBc0000011	Acetic acid	C₂H₄O₂ 60.052	Human Cerebrospinal Fluid (CSF) Human Feces Human Saliva Human Breath Human Urine Human Blood Human Breast Milk Human Kidney Human Liver	2537	Co-metabolite	Essential oil
MMDBc0000012	Betaine	C₅H₁₂NO₂ 118.1543	Human Feces Human Saliva Human Urine Human Blood Human Breast Milk Human Adipose Tissue Human Adrenal Cortex Human Adrenal Gland Human Bladder Human Epidermis Human Fibroblasts Human Intestine Human Kidney Human Liver Human Ovary Human Pancreas Human Placenta Human Platelet Human Prostate Human Skeletal Muscle Human Spleen Human Testis	1062	Co-metabolite	Not Available
MMDBc0000013	Ascorbic acid	C₆H₈O₆ 176.1241	Human Feces Human Blood Human Cerebrospinal Fluid (CSF) Human Urine Human Saliva Human Amniotic Fluid Human Breast Milk Human Cellular Cytoplasm Human Adipose Tissue Human Adrenal Cortex Human Adrenal Medulla Human Bladder Human Brain Human Epidermis Human Erythrocyte Human Eye Lens Human Fibroblasts Human Heart Human Intestine Human Leukocyte Human Liver Human Lung Human Neuron Human Ovary Human Placenta Human Platelet Human Prostate Human Skeletal Muscle Human Spleen Human Testis	37	Co-metabolite	Meat
MMDBc0000014	Melibiose	C₁₂H₂₂O₁₁ 342.2965	Human Urine Human Spleen Human Blood	87	Co-metabolite
MMDBc0000015	Adenosine	C₁₀H₁₃N₅O₄ 267.2413	Human Feces Human Urine Human Saliva Human Blood Human Cerebrospinal Fluid (CSF) Human Cellular Cytoplasm Human Breast Milk Human All Tissues Human Placenta	1619	Co-metabolite
MMDBc0000016	Ammonia	H₃N 17.0305	Human Feces Human Blood Human Urine Human Cellular Cytoplasm Human Cerebrospinal Fluid (CSF) Human All Tissues	1850	Co-metabolite
MMDBc0000017	Cellobiose	C₁₂H₂₂O₁₁ 342.2965	Human Urine Human Intestine Human Spleen Human Blood	823	Co-metabolite
MMDBc0000018	beta-Alanine	C₃H₇NO₂ 89.0932	Human Feces Human Saliva Human Cerebrospinal Fluid (CSF) Human Urine Human Blood Human Kidney Human Pancreas Human Placenta Human Prostate Human Skeletal Muscle	1256	Co-metabolite	Fruit
MMDBc0000019	L-Carnitine	C₇H₁₆NO₃ 162.2068	Human Feces Human Blood Human Urine Human Cerebrospinal Fluid (CSF) Human Breast Milk Human Saliva Human Adipose Tissue Human Bladder Human Brain Human Erythrocyte Human Fibroblasts Human Heart Human Intestine Human Kidney Human Liver Human Lung Human Neuron Human Placenta Human Platelet Human Prostate Human Semen Human Skeletal Muscle Human Testis	183	Co-metabolite	Milk
MMDBc0000020	Cholesterol	C₂₇H₄₆O 386.6535	Human Feces Human Blood Human Bile Human Cerebrospinal Fluid (CSF) Human Saliva Human All Tissues Human Placenta Human Prostate Human Urine	27	Co-metabolite	Not Available
MMDBc0000021	cis-Aconitic acid	C₆H₆O₆ 174.1082	Human Feces Human Saliva Human Urine Human Cerebrospinal Fluid (CSF) Human Sweat Human Breast Milk Human Prostate Human Blood	11	Co-metabolite	Plant
MMDBc0000022	Dimethylamine	C₂H₇N 45.0837	Human Blood Human Urine Human Saliva Human Cerebrospinal Fluid (CSF) Human Feces Human Sweat Human Fibroblasts Human Neuron	119	Co-metabolite	Leaves
MMDBc0000023	Cytidine	C₉H₁₃N₃O₅ 243.2166	Human Feces Human Saliva Human Blood Human Urine Human Cerebrospinal Fluid (CSF) Human Breast Milk Human All Tissues Human Placenta Human Prostate	1679	Co-metabolite	Not Available
MMDBc0000024	Citric acid	C₆H₈O₇ 192.1235	Human Feces Human Cerebrospinal Fluid (CSF) Human Blood Human Saliva Human Urine Human Breast Milk Human All Tissues Human Placenta Human Prostate Human Sweat	1285	Co-metabolite
MMDBc0000025	Choline	C₅H₁₄NO 104.1708	Human Feces Human Cerebrospinal Fluid (CSF) Human Saliva Human Blood Human Urine Human Sweat Human Breast Milk Human Basal Ganglia Human Bladder Human Brain Human Epidermis Human Fibroblasts Human Intestine Human Kidney Human Liver Human Neuron Human Placenta Human Platelet Human Prostate Human Skeletal Muscle Human Spleen Human Testis	1144	Co-metabolite	Meat

Biospecimens and Location

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