MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0057090	Indolylacryloylglycine	C₁₃H₁₂N₂O₃ 244.246	Human urine	0	Co-metabolite	Milk
MMDBc0057091	(S)-3-Hydroxyisobutyric acid	C₄H₈O₃ 104.105	Human Feces Human Blood Human Urine Human Cerebrospinal Fluid (CSF) Human Saliva	416	Co-metabolite	Not Available
MMDBc0057092	Ethylene glycol	C₂H₆O₂ 62.0678	Not Available	9	Co-metabolite	Not Available
MMDBc0000005	2-Ketobutyric acid	C₄H₆O₃ 102.0886	Human Feces Human Urine Human Blood Human Cerebrospinal Fluid (CSF) Human Saliva	1151	Co-metabolite
MMDBc0000006	Biotin	C₁₀H₁₆N₂O₃S 244.311	Human Feces Human Cerebrospinal Fluid (CSF) Human Blood Human Urine Human Saliva Human All Tissues Human Prostate	1425	Co-metabolite	Juice
MMDBc0000007	Carnosine	C₉H₁₄N₄O₃ 226.2325	Human Feces Human Urine Human Blood Human Saliva Human Brain Human Fibroblasts Human Intestine Human Kidney Human Liver Human Neuron Human Placenta Human Skeletal Muscle	820	Co-metabolite	Not Available
MMDBc0000008	Adenine	C₅H₅N₅ 135.1267	Human Feces Human Saliva Human Cerebrospinal Fluid (CSF) Human Blood Human Urine Human All Tissues Human Placenta Human Prostate	1788	Co-metabolite	Not Available
MMDBc0000009	Taurocholic acid	C₂₆H₄₅NO₇S 515.703	Human Feces Human Urine Human Blood Human Bile Human Fibroblasts Human Intestine Human Liver Human Neuron Human Placenta	210	Co-metabolite	Not Available
MMDBc0000010	Butyric acid	C₄H₈O₂ 88.1051	Human Feces Human Urine Human Saliva Human Breath Human Breast Milk Human Blood Human Cerebrospinal Fluid (CSF) Human Fibroblasts Human Intestine Human Kidney Human Neuron Human Prostate Human Skeletal Muscle	778	Co-metabolite	Meat
MMDBc0000011	Acetic acid	C₂H₄O₂ 60.052	Human Cerebrospinal Fluid (CSF) Human Feces Human Saliva Human Breath Human Urine Human Blood Human Breast Milk Human Kidney Human Liver	2537	Co-metabolite	Essential oil
MMDBc0000012	Betaine	C₅H₁₂NO₂ 118.1543	Human Feces Human Saliva Human Urine Human Blood Human Breast Milk Human Adipose Tissue Human Adrenal Cortex Human Adrenal Gland Human Bladder Human Epidermis Human Fibroblasts Human Intestine Human Kidney Human Liver Human Ovary Human Pancreas Human Placenta Human Platelet Human Prostate Human Skeletal Muscle Human Spleen Human Testis	1062	Co-metabolite	Not Available
MMDBc0000013	Ascorbic acid	C₆H₈O₆ 176.1241	Human Feces Human Blood Human Cerebrospinal Fluid (CSF) Human Urine Human Saliva Human Amniotic Fluid Human Breast Milk Human Cellular Cytoplasm Human Adipose Tissue Human Adrenal Cortex Human Adrenal Medulla Human Bladder Human Brain Human Epidermis Human Erythrocyte Human Eye Lens Human Fibroblasts Human Heart Human Intestine Human Leukocyte Human Liver Human Lung Human Neuron Human Ovary Human Placenta Human Platelet Human Prostate Human Skeletal Muscle Human Spleen Human Testis	37	Co-metabolite	Meat
MMDBc0000014	Melibiose	C₁₂H₂₂O₁₁ 342.2965	Human Urine Human Spleen Human Blood	87	Co-metabolite
MMDBc0000015	Adenosine	C₁₀H₁₃N₅O₄ 267.2413	Human Feces Human Urine Human Saliva Human Blood Human Cerebrospinal Fluid (CSF) Human Cellular Cytoplasm Human Breast Milk Human All Tissues Human Placenta	1619	Co-metabolite
MMDBc0000016	Ammonia	H₃N 17.0305	Human Feces Human Blood Human Urine Human Cellular Cytoplasm Human Cerebrospinal Fluid (CSF) Human All Tissues	1850	Co-metabolite
MMDBc0000017	Cellobiose	C₁₂H₂₂O₁₁ 342.2965	Human Urine Human Intestine Human Spleen Human Blood	823	Co-metabolite
MMDBc0000018	beta-Alanine	C₃H₇NO₂ 89.0932	Human Feces Human Saliva Human Cerebrospinal Fluid (CSF) Human Urine Human Blood Human Kidney Human Pancreas Human Placenta Human Prostate Human Skeletal Muscle	1256	Co-metabolite	Fruit
MMDBc0000019	L-Carnitine	C₇H₁₆NO₃ 162.2068	Human Feces Human Blood Human Urine Human Cerebrospinal Fluid (CSF) Human Breast Milk Human Saliva Human Adipose Tissue Human Bladder Human Brain Human Erythrocyte Human Fibroblasts Human Heart Human Intestine Human Kidney Human Liver Human Lung Human Neuron Human Placenta Human Platelet Human Prostate Human Semen Human Skeletal Muscle Human Testis	183	Co-metabolite	Milk
MMDBc0000020	Cholesterol	C₂₇H₄₆O 386.6535	Human Feces Human Blood Human Bile Human Cerebrospinal Fluid (CSF) Human Saliva Human All Tissues Human Placenta Human Prostate Human Urine	27	Co-metabolite	Not Available
MMDBc0000021	cis-Aconitic acid	C₆H₆O₆ 174.1082	Human Feces Human Saliva Human Urine Human Cerebrospinal Fluid (CSF) Human Sweat Human Breast Milk Human Prostate Human Blood	11	Co-metabolite	Plant
MMDBc0000022	Dimethylamine	C₂H₇N 45.0837	Human Blood Human Urine Human Saliva Human Cerebrospinal Fluid (CSF) Human Feces Human Sweat Human Fibroblasts Human Neuron	119	Co-metabolite	Leaves
MMDBc0000023	Cytidine	C₉H₁₃N₃O₅ 243.2166	Human Feces Human Saliva Human Blood Human Urine Human Cerebrospinal Fluid (CSF) Human Breast Milk Human All Tissues Human Placenta Human Prostate	1679	Co-metabolite	Not Available
MMDBc0000024	Citric acid	C₆H₈O₇ 192.1235	Human Feces Human Cerebrospinal Fluid (CSF) Human Blood Human Saliva Human Urine Human Breast Milk Human All Tissues Human Placenta Human Prostate Human Sweat	1285	Co-metabolite
MMDBc0000025	Choline	C₅H₁₄NO 104.1708	Human Feces Human Cerebrospinal Fluid (CSF) Human Saliva Human Blood Human Urine Human Sweat Human Breast Milk Human Basal Ganglia Human Bladder Human Brain Human Epidermis Human Fibroblasts Human Intestine Human Kidney Human Liver Human Neuron Human Placenta Human Platelet Human Prostate Human Skeletal Muscle Human Spleen Human Testis	1144	Co-metabolite	Meat
MMDBc0000026	D-Xylose	C₅H₁₀O₅ 150.1299	Human Feces Human Blood Human Urine Human Erythrocyte Human Intestine Human Saliva	1106	Co-metabolite	Seed

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0002426	Pyrococcus sp. NA2	Archaea	Euryarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	0
MMDBm0001403	Candidatus Zinderia insecticola CARI	Eubacteria	Proteobacteria	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	3
MMDBm0002751	Vulcanisaeta moutnovskia 768-28	Archaea	Crenarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	7
MMDBm0804868	Clostridioides difficile NAP07	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	737
MMDBm0804869	Clostridioides difficile NAP08	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	738
MMDBm0000265	Ruminococcus sp. SR1/5	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Pathogenic	650
MMDBm0646414	Schaalia cardiffensis F0333	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	631
MMDBm0805392	Agathobaculum desmolans ATCC 43058	Eubacteria	Firmicutes	Obligate anaerobe	Not Available	Human Gut	Non-pathogenic	672
MMDBm0646417	Schaalia georgiae DSM 6843	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	504
MMDBm0808723	Faecalicoccus pleomorphus DSM 20574	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	620
MMDBm0392215	Bacteroides pyogenes DSM 20611 = JCM 6294	Eubacteria	Bacteroidetes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	639
MMDBm0809759	Veillonella seminalis ACS-216-V-Col6b	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	676
MMDBm0803361	Tyzzerella nexilis DSM 1787	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	612
MMDBm0808748	Holdemanella biformis DSM 3989	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	550
MMDBm0810288	Anaerococcus hydrogenalis DSM 7454	Eubacteria	Firmicutes	Obligate anaerobe	Weakly saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	564
MMDBm0001850	Methanothermobacter marburgensis str. Marburg	Archaea	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	71
MMDBm0000833	Methanothermobacter marburgensis	Not Available	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	0
MMDBm0562753	Yersinia rohdei	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Large intestine	Pathogenic	11
MMDBm0562754	Yersinia rohdei ATCC 43380	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	892
MMDBm0882240	Ruminococcaceae bacterium	Eubacteria	Firmicutes	Obligate anaerobe	Uncharacterized	Not Available	Non-pathogenic	0
MMDBm0805202	Terrisporobacter glycolicus ATCC 14880 = DSM 1288	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	745
MMDBm0808535	Absiella dolichum DSM 3991	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	507
MMDBm0808542	Bulleidia extructa	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human	Non-pathogenic	3
MMDBm0808543	Bulleidia extructa W1219	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	530
MMDBm0801127	Hungatella hathewayi 12489931	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	750

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